Sequence
atgc intronic sequence ATGC exonic sequenceGAGTTACTGTACCTGTATGGATTTGTCATTGATAATAATCCAGATGACTATCTCATGgtaatctcatgtataagaagtttctatcttgtccatttattatacatgctctccaggtccattacagtactttggtttctggtgtttatgttaatttaaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0043g00790.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os06g03676.1 (Oryza sativa), 5'ss of exon 11
GAGTTACTGTACCTGTATGGATTTGTCATTGATAATAATCCAGATGACTATCTCATGgtaatctcatgtataaga--agtttctatcttgtccatttattatacatgctctccaggtccattacagtactt-tggtttctggtgtttatgttaatttaaa
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GAACTACTATACCTCTATGGATTTGTAATTGACAACAATCCTGACGATTATCTCATGgtaacactcagtaagagattacttttagcaacaggtgtttgtcaactcagttttctttgtttagcatattccctgccagatattctctttctgtcaaaca---
upper sequence: Vv04s0043g00790.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G078458_T04 (Zea mays), 5'ss of exon 11
GAGTTACTGTACCTGTATGGATTTGTCATTGATAATAATCCAGATGACTATCTCATGgtaatctc-----------atgtataagaagtttctatcttgtccatttattatacatgctctccaggtccattacagtactttggtttctggtgtttatgttaatttaaa
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GAACTACTGTACCTTTATGGATTTGTGGTTGACAACAATCCTGATGATTATCTCATGgtaaccctcataatgatgtatgtgttaaaagataataatttgga-atttttgccatttatctttgtggccaatgaacaaagaaaggtc---aaatttcaggcta-------
upper sequence: Vv04s0043g00790.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA09G39970.1 (Glycine max), 5'ss of exon 13
GAGTTACTGTACCTGTATGGATTTGTCATTGATAATAATCCAGATGACTATCTCATGgtaatctcatgtataagaagtttctatcttgtccatttattatacatgctctccaggtccattacagtactttggtttctggtgtttatgttaatttaaa
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GAACTTCTATATCTGTATGGTTTTGTCATTGATGATAACACAGATGACTATCTCATGgtaaaggcttatacttggaccttgtacaccctgagtgtctctt---tgttcttcaa------tatgttattccccctcttaatttttcttcttag-----
upper sequence: Vv04s0043g00790.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA18G46250.1 (Glycine max), 5'ss of exon 12
GAGTTACTGTACCTGTATGGATTTGTCATTGATAATAATCCAGATGACTATCTCATGgtaatctcatgtataagaagtttctatcttgtccatttattatacatgctctccagg-tccattacagtactttggtttctggtgtttatgttaatttaaa
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GAACTTCTGTATCTGTATGGTTTTGTTATTGATGATAACACTGATGACTATCTCATGGTAAAGGCTTATAC-------TTGGACCTTGTGCACCGAgtaaaatttctctttattcttcaacatgttattccccatcttaatttttcttcttag-----
upper sequence: Vv04s0043g00790.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT1G01920.2 (Arabidopsis thaliana), 5'ss of exon 11
GAGTTACTGTACCTGTATGGATTTGTCATTGATAATAATCCAGATGACTATCTCATGgtaatct---catgtataagaagtttc-tatcttgtccatttattatacat------gctctccaggtccattac-agtactttggtttctggtgtttatgttaatttaaa-------------------------------------------------
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GAGCTTCTTTACCTGTATGGCTTTGTGATAGATAACAACCCAGATGATTATCTCATGgtaatatttacatccatcaacagttccctaccttttcaaccagtgatgtattatagaagtcttgagaatgatgacgagaaacataactttcaagatcaaggagatgctcgtcaattttgttctcacatctgttgttacgtttaacaatggatttattcag
upper sequence: Vv04s0043g00790.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT1G01920.1 (Arabidopsis thaliana), 5'ss of exon 11
GAGTTACTGTACCTGTATGGATTTGTCATTGATAATAATCCAGATGACTATCTCATGgtaatct---catgtataagaagtttc-tatcttgtccatttattatacatgctctccaggtccattacagtactttggtttctggtgtttatgttaatttaaa
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GAGCTTCTTTACCTGTATGGCTTTGTGATAGATAACAACCCAGATGATTATCTCATGgtaatatttacatccatcaacagttccctaccttttcaaccagtgatgtattatagaagtcttgagaatgatgacgagaaacataactttcaag----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34542617|gb|CF510849.1|CF510849EST: TGTACCTGTATGGATTTGTCATTGATAATAATCCAGATGACTATCTCATG GTCCATTATCCAATGGAGTTATTTAAGAATGTCCCTTTTTCTGAATCCAAA
genomic: TGTACCTGTATGGATTTGTCATTGATAATAATCCAGATGACTATCTCATGgtaatctcat ... aactatgcagGTCCATTATCCAATGGAGTTATTTAAGAATGTCCCTTTTTCTGAATCCAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGTTACTGTACCTGTATGGATTTGTCATTGATAATAATCCAGATGACTATCTCATGgtaatctcatgtataagaagtttctatcttgtccatttattatacatgctctccaggtccattacagtactttggtttctggtgtttatgttaatttaaa
- - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctcca