Sequence
atgc intronic sequence ATGC exonic sequenceTGTTTGGGGTTGGACTTGGGAAAAAGAACTGAAGAACAAACCTCCTCGTAGTTGGACACAGGAATGGGAAGTTGAGTTGGCAATCAAAGTAATGCTGAAGgcatgttcgcgtatcttgtgcttacatcctactgcatttctgattctagtattatttcacattatacatcatctttcctcatctatatgaattactccta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0043g00700.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA20G36340.1 (Glycine max), 5'ss of exon 11
TGTTTGGGGTTGGACTTGGGAAAAAGAACTGAAGAACAAACCTCCTCGTAGTTGGACACAGGAATGGGAAGTTGAGTTGGCAATCAAAGTAATGCTGAAGgcatgttcgcgtatcttg-----tgcttacatcctactgcatttctgattctagtattatttcacattatacatcatctttcctcatctatatgaattactccta
|| |||||| ||||| ||||| | |||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||| ||||| | | | |||| | || | | |||||| || |||| | || | || | | |||| | | | || | ||
TGCTTGGGGATGGACATGGGAGAGAGAACTGAAGAAGAAACCTCCTCGTAGATGGTCACAGGAATGGGAAGTTGAGTTGGCAATCAAAGTTATGCAGAAGgtaaatagctaaaccttgactgttttttccttttaactgcaaacttgcttctttttttggtcagca--agcttgcttcttgttgaaatggttttaaatggtc---
upper sequence: Vv04s0043g00700.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA10G31180.1 (Glycine max), 5'ss of exon 11
TGTTTGGGGTTGGACTTGGGAAAAAGAACTGAAGAACAAACCTCCTCGTAGTTGGACACAGGAATGGGAAGTTGAGTTGGCAATCAAAGTAATGCTGAAGgcatgttcgcgtatcttg-----tgcttacatcctactgcatttctgattctagtattatttcacattatac-atcatctttcctcatctatatgaattactccta
|| |||||| ||||| ||||| | |||||| |||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||| |||| |||| | | | ||| | || | | |||||| || |||| || | | | ||| | |||| || | | | | | |
TGCTTGGGGATGGACATGGGAGAGAGAACTCAAGAACAAACCTCCTCGTAGATGGTCACAGGAAAGGGAAGTTGAGTTGGCAATCAAAGTTATGCACAAGgtaaatagctaaaccttaactgttttttccttttaactgcaaacttgcttcttgt-tgaaatggttttaaatgatcaaattcctctgtttcttgtagacag-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71876849|gb|DT025904.1|DT025904EST: GTTGGACACAGGAATGGGAAGTTGAGTTGGCAATCAAAGTAATGCTGAAG GTAATAGAATTGGGTGGGACACCAACTATTGGAGACTGTGCTATGATACTG
genomic: GTTGGACACAGGAATGGGAAGTTGAGTTGGCAATCAAAGTAATGCTGAAGgcatgttcgc ... tatatttcagGTAATAGAATTGGGTGGGACACCAACTATTGGAGACTGTGCTATGATACTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTTTGGGGTTGGACTTGGGAAAAAGAACTGAAGAACAAACCTCCTCGTAGTTGGACACAGGAATGGGAAGTTGAGTTGGCAATCAAAGTAATGCTGAAGgcatgttcgcgtatcttgtgcttacatcctactgcatttctgattctagtattatttcacattatacatcatctttcctcatctatatgaattactccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG