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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGCACAGGCTATCGGATTATAGACATGATGACAGAACCTTATAGGCTAATCCGTCGATGTGAAGTGACAGCAATTCTCATTTTGTATGGGCTCCCAAGgtacatctcttataccctctatagcaaattgtttacttgctttagtagttttgatgcatgtggcaaaaacaaccttccttgaatacag

Basic information

species Vitis vinifera
transcript Vv04s0023g01030.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os06g08400.2 (Oryza sativa), 5'ss of exon 10
TTGGCACAGGCTATCGGATTATAGACATGATGACAGAACCTTATAGGCTAATCCGTCGATGTGAAGTGACAGCAATTCTCATTTTGTATGGGCTCCCAAGgtacatctcttataccctctatagcaa----attgtttacttgctttagtagttttgatgcatgtggcaaa-aacaaccttccttgaatacag-------
      | ||  ||    |||| || ||||| || || || |||||| | |  ||||||||||||||||| |||||||||||| | ||||| ||||||||||  | | ||||    || | |   ||    ||||||  |||| |       |||| ||         ||  |  |    |  | ||||  |        
GAATGGCTGGAAATAAAGTTATGGAAATGATAACGGAGCCATATAGGTTGACTCGTCGATGTGAAGTGACTGCAATTCTCATTCTTTATGGTCTCCCAAGgtgaaccacttactatctgtttcataatgccattgttaccttgttgctactcttttaatatcaacaaaaactaggaggaatattcgaatttataactgat

upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G017845_T01 (Zea mays), 5'ss of exon 10
TTGGCACAGGCTATCGGATTATAGACATGATGACAGAACCTTATAGGCTAATCCGTCGATGTGAAGTGACAGCAATTCTCATTTTGTATGGGCTCCCAAGgtacatctcttataccctctatagcaaattgtt-tacttgctttagtagttttgatgcatgtggcaaaaacaacctt---ccttgaatacag--------
      | ||  |    ||||| |  ||||| ||||| || |||||||| |  || |||||||||||||| |||||||| ||| ||||||| ||||||||||  |      |     | | | | | | |||  || |   |           ||  ||    ||     || | ||   |  |   | ||         
GAATGGCTGGAAACAAAATTATGGGAATGATAACAGAGCCATATAGGCTGACACGGCGATGTGAAGTGACTGCAATTCTTATTCTGTATGGTCTCCCAAGgtgaaatgtcaaccttttgttttgtataatgtcataatcagtacctcctgaccgagacaatctgctgccccagctttaatctctacgtgcacttttgccc

upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA11G06650.2 (Glycine max), 5'ss of exon 6
TTGGCACAGGCTATCGGATTATAGACATGATGACAGAACCTTATAGGCTAATCCGTCGATGTGAAGTGACAGCAATTCTCATTTTGTATGGGCTCCCAAGgtacatctcttataccctcta---tagcaaattgtt-tacttgc-tttagtagttttgatgcatgtggcaaaaacaaccttccttgaatacag
|||   ||||||| ||    ||||||||||| || |||||||||||||| |||||| | |||||||||||||| |||||  |||||||||| || || |||||    |||| |||  ||||   |   ||  |    | ||||| | |   | |  | ||  ||    |||        ||   ||  || ||
TTGCAGCAGGCTACCGAGCCATAGACATGATAACTGAACCTTATAGGCTGATCCGTTGTTGTGAAGTGACAGCCATTCTTGTTTTGTATGGCCTTCCTAGgtatccttcttgtacaatctactttcataatctacagtgcttgcatatgacattcctcatatataattcaa---tttttttttatgtttatag

upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA01G38640.3 (Glycine max), 5'ss of exon 7
TTGGCACAGGCTATCGGATTATAGACATGATGACAGAACCTTATAGGCTAATCCGTCGATGTGAAGTGACAGCAATTCTCATTTTGTATGGGCTCCCAAGgtacatctcttataccctctatagcaaattgtttact-tgctttagta-gttttgatgcatgtggcaaaaacaaccttccttgaatacag
||||  ||||||| ||    ||||||||||| || |||||||||||| | |||||||  |||||||||||||| |||||  |||||||||| || || |||||    ||||||||  ||||     | |  | |||  |||||   || |   |    ||| |   |   |    |||   || ||| ||
TTGGAGCAGGCTACCGAGCCATAGACATGATAACTGAACCTTATAGGTTGATCCGTCATTGTGAAGTGACAGCCATTCTTGTTTTGTATGGCCTTCCTAGgtatccttcttatacaatctactttca-taatctacagtgcttgcatatgacattccccatatataattcaatttcttttatgtatatag

upper sequence: Vv04s0023g01030.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT4G36860.1 (Arabidopsis thaliana), 5'ss of exon 10
TTGGCACAGGCTATCGGATTATAGACATGATGACAGAACCTTATAGGCTAATCCGTCGATGTGAAGTGACAGCAATTCTCATTTTGTATGGGCTCCCAAGgtacatctcttataccctctatagcaaattgtttacttgctttagtagttttgatgcatgtggcaaaaacaaccttccttgaatacag
||||  |||||||   | | ||||||||||| ||||| ||||  ||||| || ||||| |||||||| || || ||||||||||| ||||| || ||  |||| |      | ||     |   ||         |    ||| ||  || | |   || |   ||        || |     |||||
TTGGGGCAGGCTACAAGTTAATAGACATGATCACAGAGCCTTGCAGGCTGATACGTCGTTGTGAAGTCACTGCGATTCTCATTTTATATGGACTTCCTCGgtaaaagaaaaacacttctcaacacactcctaaaccaaatttttgtctttataagatatctaa-aattttcgtattacacttgtacag