1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ACTTACGCTCATGATGATATATCTGTGGGGTCATGGATGATGGGTATCCAGGCAACCTATATAGATGACAATCGTTTGTGCTGCAGTAGCTCCCGACAAGgtgaattcactcacttgctcttccttttttcctaacaaatgattttctttccattgctaatccaacatcactagtctttctgtggctcatgtgatatatc...
species | Vitis vinifera |
transcript | Vv04s0008g06480.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GGCAACCTATATAGATGACAATCGTTTGTGCTGCAGTAGCTCCCGACAAG ATAAGGTATGCTCCGCGGCTTGATCAGAAGAAGCAGCTTCTCTCCGTCAGAEST: gi|110427411|gb|EC993848.1|EC993848
genomic: GGCAACCTATATAGATGACAATCGTTTGTGCTGCAGTAGCTCCCGACAAGgtgaattcac ... ttggtttcagATAAGGTATGCTCCGCGGCTTGATCAGAAGAAGCAGCTTCTCTCCGTCAGA
EST: GGCAACCTATATAGATGACAATCGTTTGTGCTGCAGTAGCTCCCGACAAG ATAAGGTATGCTCCGCGGCTTGATCAGAAGAAGCAGCTTCTCTCCGTCAGAEST: gi|351029617|gb|FQ427457.1|FQ427457
genomic: GGCAACCTATATAGATGACAATCGTTTGTGCTGCAGTAGCTCCCGACAAGgtgaattcac ... ttggtttcagATAAGGTATGCTCCGCGGCTTGATCAGAAGAAGCAGCTTCTCTCCGTCAGA
EST: GGCAACCTATATAGATGACAATCGTTTGTGCTGCAGTAGCTCCCGACAAG ATAAGGTATGCTCCGCGGCTTGATCAGAAGAAGCAGCTTCTCTCCGTCAGAEST: gi|110424757|gb|EC991128.1|EC991128
genomic: GGCAACCTATATAGATGACAATCGTTTGTGCTGCAGTAGCTCCCGACAAGgtgaattcac ... ttggtttcagATAAGGTATGCTCCGCGGCTTGATCAGAAGAAGCAGCTTCTCTCCGTCAGA
EST: GGCAACCTATATAGATGACAATCGTTTGTGCTGCAGTAGCTCCCGACAAG ATAAGGTATGCTCCGCGGCTTGATCAGAAGAAGCAGCTTTTTTCCGTCAGAEST: gi|30131948|gb|CB917287.1|CB917287
genomic: GGCAACCTATATAGATGACAATCGTTTGTGCTGCAGTAGCTCCCGACAAGgtgaattcac ... ttggtttcagATAAGGTATGCTCCGCGGCTTGATCAGAAGAAGCAGCTTCTCTCCGTCAGA
EST: GGCAACCTATATAGATGACAATCGTTTGTGCTGCAGTAGCTCCCGACAAG ATAAGGTATGCTCCGCGGCTTGATCAGAAGAAGCAGCTTCTCTCCGTCAGA
genomic: GGCAACCTATATAGATGACAATCGTTTGTGCTGCAGTAGCTCCCGACAAGgtgaattcac ... ttggtttcagATAAGGTATGCTCCGCGGCTTGATCAGAAGAAGCAGCTTCTCTCCGTCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTACGCTCATGATGATATATCTGTGGGGTCATGGATGATGGGTATCCAGGCAACCTATATAGATGACAATCGTTTGTGCTGCAGTAGCTCCCGACAAGgtgaattcactcacttgctcttccttttttcctaacaaatgattttctttccattgctaatccaacatcactagtctttctgtggctcatgtgatatatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taacaaa