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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAACGGAGATAGGCGGAGCAATGGCATTGAAGAAGTCAAATCTGATAGAAGTGCAGAAAGACAACCTGATGTTGTAGATGATCACCCAGGAAAATCTAGgtctactttccatcctcctcacacctcagttattctttatgctaaccgattcttccagatccggtattttattaaaagttgatgagcag

Basic information

species Vitis vinifera
transcript Vv04s0008g05090.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g05090.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA14G14970.1 (Glycine max), 5'ss of exon 11
AAAACGGAGATAGGCGGAGCAATGGCATTGAAGAAGTC---AAATCTGATAGAAGTGCAGAAAGACAACCTGATGTTGTAGATGATCACCCAGGAAAATCTAGgtctactttccatcctcctcacacctcagttattctttatgctaaccgattcttccagatccggtattttattaaaagttgatgagcag
   | |||||  |||  |||||  ||| ||  |    |   | |||||| ||||| | ||  || || ||||||||  | |||||||| | ||| ||||||||||||||||||||| ||  |||||||||| |||||  ||||||| |||  |||||| ||||| || ||||||| ||||||||||||||||
---ATGGAGAGTGGCATAGCAACAGCACTGGGGCTAACCATAGATCTGACAGAAGGGAAGGGAGGCAGCCTGATGTGATGGATGATCAACTAGGCAAATCTAGgtctactttccattcttgtcacacctcatttatttcttatgcttaccatttcttcaagatcaggcattttatgaaaagttgatgagcag

upper sequence: Vv04s0008g05090.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA04G07300.2 (Glycine max), 5'ss of exon 11
AAAACGGAGATAGGCGGAGCAATGGCATTGAAGAAGTCAA------ATCTGATAGAAGTGCAGAAAGACAACCTGATGTTGTAGATGATCACCCAGGAAAATCTAGgtctactttccatcctcctcacacctcagttattctttatgctaaccgattcttccagatccggtattttattaaaagttgatgagcag
      ||||    || ||||||||||||| || ||   |      |||||| ||||||| ||| || || ||||| ||| | ||||||||  |||| ||| ||||||||||||||     |  ||||||||||||||||  ||||||| |||  |||||||||||| ||||||||||| |||||||||||||||
------GAGAGCAACGCAGCAATGGCATTGGAGGAGCTGACTATGGATCTGACAGAAGTGAAGAGAGGCAGCCTGACGTTATGGATGATCATTCAGGCAAAACTAGgtctactttcttctttagtcacacctcagttatttcttatgcttaccatttcttccagatctggtattttattgaaagttgatgagcag

upper sequence: Vv04s0008g05090.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA06G07380.3 (Glycine max), 5'ss of exon 10
AAAACGGAGATAGGCGGAGCAATGGCATTGAAGAAGTCAAATCTGATAGAAGTGCAGAAAGACAACCTGATGTTGTAGATGATCACCCAGGAAAATCTAGgtctactttccatcctcctcacacctcagttattctttatgctaaccgattcttccagatccggtattttattaaaagttgatgagcag---
                                                               | ||||| ||| | ||||||||  |||| ||| |||||||||||||||    |  ||||||||||||||||  ||||| | |||  |||||||||||| ||||||||||| |||||||||||||||   
---------------------------------------------------------------AGCCTGACGTTATGGATGATCATTCAGGCAAAACTAGGTCTACTTTCCTCTTTAGTCACACCTCAGTTATTTCTTATGTTTACCATTTCTTCCAGATCTGgtattttattgaaagttgatgagcaggag

upper sequence: Vv04s0008g05090.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA04G07300.1 (Glycine max), 5'ss of exon 12
AAAACGGAGATAGGCGGAGCAATGGCATTGAAGAAGTCAAATCTGATAGAAGTGCAGAAAGACAACCTGATGTTGTAGATGATCACCCAGGAAAATCTAGgtctactttccatcctcctcacacctcagttattctttatgctaaccgattcttccagatccggtattttattaaaagttgatgagcag----------------------
                                                                                                                                 |||||  ||||||| |||  |||||||||||| ||||||||||| |||||||||||||||                      
---------------------------------------------------------------------------------------------------------------------------------TTATTTCTTATGCTTACCATTTCTTCCAGATCTGgtattttattgaaagttgatgagcaggagtcgaagtgtgagtcctaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30297167|gb|CB973961.1|CB973961
EST:     AGTGCAGAAAGACAACCTGATGTTGTAGATGATCGCCCAGGAAAATCTAG                         GAGCCGAAGCATGAGTCCCAAAAGGACCATGAGTAAGAGTATGAGTATTAG
genomic: AGTGCAGAAAGACAACCTGATGTTGTAGATGATCACCCAGGAAAATCTAGgtctactttc ... tgatgagcagGAGCCGAAGCATGAGTCCCAAAAGGACCATGAGTAAGAGTATGAGTATTAG
EST: gi|46917966|gb|CN547295.1|CN547295
EST:     AGTGCAGAAAGACAACCTGATGTTGTAGATGATCACCCAGGAAAATCTAG                         GAGCCGAAGCATGAGTCCCAAAAGGACCATGAGTAAGAGTATGAGTATTAG
genomic: AGTGCAGAAAGACAACCTGATGTTGTAGATGATCACCCAGGAAAATCTAGgtctactttc ... tgatgagcagGAGCCGAAGCATGAGTCCCAAAAGGACCATGAGTAAGAGTATGAGTATTAG