Sequence
atgc intronic sequence ATGC exonic sequenceGAGTTCAAATCACAACATGCATCAGCAAGATAAAATGGGGGGAGCTGGCAGCATCACTGTGGATGGTAGCATGTCAAATTCTTTTCGAGGAAATGATCAGgtctgttccacgtgggagccttctttgttcaatttcttttaaaaatgacaataatcaggaatacagtaaatagcaacatttccttaaatggtatcactac...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g04890.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA14G16040.1 (Glycine max), 5'ss of exon 10
GAGTTCAAATCACAACATGCATCAGCAAGATAAAATGGGGGGAGCTGGCAGCA---TCACTGTGGATGGTAGCATGTCAAATTCTTTTCGAGGAAATGATCAGgtctgttccac-gtgggagccttctttgt-tcaatttcttttaaaaatgacaataatcaggaatacagtaaatagcaacatttccttaaatggtatcactac
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---TTCAAATCATAGCATGCATCAACAAGATAAAATGGGGGGAGGTGGTGGCAGTGTCAATGTGGATGGTAGCATGTCAAACTCCTTTAGAGGCAATGATCAGgtcagtccttttatggttgccacaaccacatgcatatttgagaaatttagctgtggataatttttctattatcttatggaatcattagggcaata-cacca-
upper sequence: Vv04s0008g04890.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA04G07460.1 (Glycine max), 5'ss of exon 10
GAGTTCAAATCACAACATGCATCAGCAAGATAAAATGGGGGGAGCTGGCAGCA---TCACTGTGGATGGTAGCATGTCAAATTCTTTTCGAGGAAATGATCAGgtctgttccacgtgggagccttctttgttcaatttcttttaaaaatgacaataatcaggaatacagtaaatagcaacatt-tccttaaatggtatcactac-
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---TTCTAATCATAGCATGCATCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGTGTCACTGTGGATGGTAGCATGTCAAACTCATTTAGAGGAAATGACCAGgtcagtcctt--ttatagttgttggtaccacatacatgttgaagcagtagttgtttcttgggatcttaattccttatggaatcattgggcagtatatttctt
upper sequence: Vv04s0008g04890.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA17G30910.1 (Glycine max), 5'ss of exon 10
GAGTTCAAATCACAACATGCATCAGCAAGATAAAATGGGGGGAGCTGGC------AGCATCACTGTGGATGGTAGCATGTCAAATTCTTTTCGAGGAAATGATCAGgtctgttccac-gtgggagccttctttgttcaatttcttttaaaaatga-caataatcaggaatacagtaaatagcaacatttccttaaatggtat-cactac
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------AAATCATAGCATGCATCAGCAAGATAAAATGGGAGGAGGTGGTGGTAGTAGTGTCAATGTGGATGGTAGCATGTCAAATTCCTTTAGAGGAAATGATCAGgtcagtccttttatggttgccgcaaccccatgcatatttgagaaattgagctatgcataatttttcaattccttttatcaatcatttgggcaatacacac---
upper sequence: Vv04s0008g04890.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA06G07580.1 (Glycine max), 5'ss of exon 10
GAGTTCAAATCACAACATGCATCAGCAAGATAAAATGGGGGGA------GCTGGCAGCATCACTGTGGATGGTAGCATGTCAAATTCTTTTCGAGGAAATGATCAGgtctgttccacgtgggagccttctttgttcaatttcttttaaaaatgacaataatcaggaatacagtaaatagcaacatttccttaaatggtatcactac----
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------TAATCATAGCATGCACCAGCAAGATAAAGTAGGTGGAGGTGGTGGTGGCAGTGTCACTGTGGATGGTAGCATGTCAAACTCATTTAGAGGAAATGACCAGgtcagtcctt--ttatagttgttgataccacatacatgttgaag-cagtagttgtttcttat-cattgggcagtatgtttcttctgacttgtaaaagaatgtatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110711263|gb|EE087569.1|EE087569EST: GCATCACTGTGGATGGTAGCATGTCAAATTCTTTTCGAGGAAATGATCAG GCTTCAAAAAACCGGACTGGAAGAAAGAGAAAGCAGCCTGTTTCATCTTCT
genomic: GCATCACTGTGGATGGTAGCATGTCAAATTCTTTTCGAGGAAATGATCAGgtctgttcca ... gcattttaagGCTTCAAAAAACCAGACTGGAAGAAAGAGAAAGCAGCCTGTTTCATCTTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGTTCAAATCACAACATGCATCAGCAAGATAAAATGGGGGGAGCTGGCAGCATCACTGTGGATGGTAGCATGTCAAATTCTTTTCGAGGAAATGATCAGgtctgttccacgtgggagccttctttgttcaatttcttttaaaaatgacaataatcaggaatacagtaaatagcaacatttccttaaatggtatcactac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgggag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagtaaa