Sequence
atgc intronic sequence ATGC exonic sequenceTGTTGAAAAGTATTTCAGGGGAGGATCACGGTTGAATTGGCCTGAAGGAGCAGTTTCTAGGGAAAGTATCAGAGCAGTGAAGAAGCTTGACCGTCTGAAGgttccaccattttctccttctgcctttgatttcaataaacctgaagttccacttttctggtacattttttagtaaactgtatgtccggtaaatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g04220.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G366935_T01 (Zea mays), 5'ss of exon 10
TGTTGAAAAGTATTTCAGGGGAGGATCACGGTTGAATTGGCCTGAAGGAGCAGTTTCTAGGGAAAGTATCAGAGCAGTGAAGAAGCTTGACCGTCTGAAGgttcca--ccattttctccttctgcctttgatttcaataaacctgaagtt-ccacttttctggt--acattttttagtaaactgt-atgtccggta-aatgcag
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TGCTCAGAAATATTTCAGGAGGGCAACACGTTTAAATTGGCCTGAAGGTGCTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAGgttttagttccctcatttctgctgctttggccgtgcttatccatcaacttaccacactttgacttaagacattttaatattttcttgtctttggtctgat----
upper sequence: Vv04s0008g04220.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G366935_T08 (Zea mays), 5'ss of exon 10
TGTTGAAAAGTATTTCAGGGGAGGATCACGGTTGAATTGGCCTGAAGGAGCAGTTTCTAGGGAAAGTATCAGAGCAGTGAAGAAGCTTGACCGTCTGAAGgttcca--ccattttctccttctgcctttgatttcaataaacctgaagtt-ccacttttctggt--acattttttagtaaactgt-atgtccggta-aatgcag
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-------AAATATTTCAGGAGGGCAACACGTTTAAATTGGCCTGAAGGTGCTGTTTCAAGAGAAAGCATCAGAGCTGTGAAGAAACTGGATCGACTAAAGgttttagttccctcatttctgctgctttggccgtgcttatccatcaacttaccacactttgacttaagacattttaatattttcttgtctttggtctgat----
upper sequence: Vv04s0008g04220.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA06G08480.1 (Glycine max), 5'ss of exon 11
TGTTGAAAAGTATTTCAGGGGAGGATCACGGTTGAATTGGCCTGAAGGAGCAGTTTCTAGGGAAAGTATCAGAGCAGTGAAGAAGCTTGACCGTCTGAAGgttccac-cattttctccttctgcctttgatttcaataaacctgaagttccacttttctggtacattttttagtaaac---tgtatgtccggtaaatgcag-------------------------------
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TGCAGAAAAATATTTCAAGCGAGGATCGCGACTAAGATGGCCTGAAGGAGCTGTTTCAAGGGAGAGCATTAGTGCAGTGAAGAAGCTTGGTCATCTTAAGgtttgttgtgtttcttactgccttccttaattgc--tgggtttgaaccttcaatcaattagtgcaccccagtgtgtgtgtgtgtgtgtattgatattgtaattataatgacctataattattcttaatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110378511|gb|EC943648.1|EC943648EST: CAGTTTCTAGGGAAAGTATAAGAGCAGTGAAGAAGCTTGACCGTCTGAAG GATATGGTATTACAGCATGTGGGGAGCTCAAGATCACCTCTTACTGACTTG
genomic: CAGTTTCTAGGGAAAGTATCAGAGCAGTGAAGAAGCTTGACCGTCTGAAGgttccaccat ... gtaaatgcagGATATGGTATTACAGCATGTGGGGAGCTCAAGATCATCTCTTACTGACTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTTGAAAAGTATTTCAGGGGAGGATCACGGTTGAATTGGCCTGAAGGAGCAGTTTCTAGGGAAAGTATCAGAGCAGTGAAGAAGCTTGACCGTCTGAAGgttccaccattttctccttctgcctttgatttcaataaacctgaagttccacttttctggtacattttttagtaaactgtatgtccggtaaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG