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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTTGCAAGGTAACCAGCTTTCAGGGCAAATCCCATCAGTGATTGGTCTCATGCAGGCTCTTGCTGTCTTgtaagttatccaaaagcttaatgtgcttattctaagtgatgtccattctttctttctatatatacatgtatttctgtttcatttatttttacttgttttacccag

Basic information

species Vitis vinifera
transcript Vv04s0008g01970.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA06G05900.3 (Glycine max), 5'ss of exon 11
ATCCTTGCAAGGTAACCAGCTTTCAGGGCAAATCCCATCAGTGATTGGTCTCATGCAGGCTCTTGCTGTCTTgtaag--ttatccaaaagc---ttaatgtgcttattctaagtgatgtccattctttctttctatatatacatgtatttctgtttcatttatttttacttgttttacccag
 || |||||||| ||  | || |||||||| || ||||||||||||||||| ||||| || ||| ||||||||||||  || | | |||||    | |||   ||  | |   |||  |  ||||||||| | ||| ||   ||   | | |    |||||  | |                
GTCATTGCAAGGCAATAAACTCTCAGGGCATATTCCATCAGTGATTGGTCTGATGCAAGCGCTTACTGTCTTgtaagcattgtactaaagcaaacttatgaagtttctttgt-tgacttgtattctttctct-tatttactaatcggtcttt-cgacatttcctatag--------------

upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA14G11220.1 (Glycine max), 5'ss of exon 11
ATCCTTGCAAGGTAACCAGCTTTCAGGGCAAATCCCATCAGTGATTGGTCTCATGCAGGCTCTTGCTGTCTTgtaag--ttat------ccaaaagcttaatgtgcttattctaagtgatgtccattctttctttctatatatac------atgtatttctgt--ttcatttatttttacttgttttacccag
 || |||||||| ||  | || || || || || ||||||||||| ||||||||||| || ||||||||| ||||||  || |      | ||   || |||    || || |  ||||  |    || ||   |  || | | |      |||   || |    || ||||  ||  |  | |   | ||||
GTCGTTGCAAGGCAATAAACTCTCTGGACATATTCCATCAGTGATCGGTCTCATGCAAGCACTTGCTGTCCTgtaagcattgtgtgttactaatttctgaattatttttttttttgtgaaatttggtcattgacttgatgttttctccctaatgctcttttaatattgattttattccaaatttccaatccag

upper sequence: Vv04s0008g01970.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT2G26330.1 (Arabidopsis thaliana), 5'ss of exon 11
ATCCTTGCAAGGTAACCAGCTTTCAGGGCAAATCCCATCAGTGATTGGTCTCATGCAGGCTCTTGCTGTCTTgtaagttatccaaaagcttaatgtgcttattctaagtgatgtccattctttctttctatatatacatgtatttctgtttcatttatttttacttgttttacccag
||| |||||||| || || || || ||| | || ||||||||||||||||||||||| || ||||| |||||||||||          |||       || ||||||   |||        | |||   | || | |||| | ||  |||  || | || ||               
ATCATTGCAAGGCAATCAACTCTCTGGGAAGATTCCATCAGTGATTGGTCTCATGCAAGCCCTTGCAGTCTTgtaagt---------actt-------ttcttctaatcaatgaag----ctacttataacattttcatgaacttaggttatatgttttcttttacag---------