1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AGCCGTGGTATGCAATCAACTATATACGTGGAAATGACCCCAGGAGTCACAATTGAGGATTTGTACAAACAATTAAAGATTGCCTATGAGgtatttgtttcatgatgtgactttcacacactggtttcacttttaggggtctcattgattcacagccaatgttcacaaagaatagagcttcaaattcatg...
species | Vitis vinifera |
transcript | Vv03s0063g01110.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CAGGAGTCACAATTGAGGATTTGTACAAACAATTAAAGATTGCCTATGAG GACGAAGAATTTGTAATTTTGCTGGAGAAAGGAGTTGTTCCTCATACTCGAEST: gi|110390116|gb|EC955007.1|EC955007
genomic: CAGGAGTCACAATTGAGGATTTGTACAAACAATTAAAGATTGCCTATGAGgtatttgttt ... ctcttttcagGACGAAGAATTTGTAATTTTGCTGGAGAAAGGAGTTGTTCCTCATACTCGA
EST: CAGGAGTCACAATTGAGGATTTGTACAAACAATTAAAGATTGCCTATGAG GACGAAGAATTTGTAATTTTGCTGGAGAAAGGAGTTGTTCCTCATACTCGAEST: gi|30330207|gb|CD013469.1|CD013469
genomic: CAGGAGTCACAATTGAGGATTTGTACAAACAATTAAAGATTGCCTATGAGgtatttgttt ... ctcttttcagGACGAAGAATTTGTAATTTTGCTGGAGAAAGGAGTTGTTCCTCATACTCGA
EST: CAGGAGTCACAATTGAGGATTTGTACAAACAATTAAAGATTGCCTATGAG GACGAAGAATTTGTAATTTTGCTGGAGAAAGGAGTTGTTCCTCATACTCGAEST: gi|30134557|gb|CB919895.1|CB919895
genomic: CAGGAGTCACAATTGAGGATTTGTACAAACAATTAAAGATTGCCTATGAGgtatttgttt ... ctcttttcagGACGAAGAATTTGTAATTTTGCTGGAGAAAGGAGTTGTTCCTCATACTCGA
EST: CAGGAGTCACAATTGAGGATTTGTACAAACAATTAAAGATTGCCTATGAG GACGAAGAATTTGTAATTTTGCTGGAGAAAGGAGTTGTTCCTCATACTCGAEST: gi|87584416|gb|DY473601.1|DY473601
genomic: CAGGAGTCACAATTGAGGATTTGTACAAACAATTAAAGATTGCCTATGAGgtatttgttt ... ctcttttcagGACGAAGAATTTGTAATTTTGCTGGAGAAAGGAGTTGTTCCTCATACTCGA
EST: CAGGAGTCACAATTGAGGATTTGTACAAACAATTAAAGATTGCCTATGAG GACGAAGAATTTGTAATTTTGCTGGAGAAAGGAGTTGTTCCTCATACTCGAEST: gi|30329402|gb|CD012664.1|CD012664
genomic: CAGGAGTCACAATTGAGGATTTGTACAAACAATTAAAGATTGCCTATGAGgtatttgttt ... ctcttttcagGACGAAGAATTTGTAATTTTGCTGGAGAAAGGAGTTGTTCCTCATACTCGA
EST: CAGGAGTCACAATTGAGGATTTGTACAAACAATTAAAGATTGCCTATGAG GACGAAGAATTTGTAATTTTGCTGGAGAAAGGAGTTGTTCCTCATACTCGAEST: gi|30320747|gb|CD004009.1|CD004009
genomic: CAGGAGTCACAATTGAGGATTTGTACAAACAATTAAAGATTGCCTATGAGgtatttgttt ... ctcttttcagGACGAAGAATTTGTAATTTTGCTGGAGAAAGGAGTTGTTCCTCATACTCGA
EST: CAGGAGTCACAATTGAGGATTTGTACAAACAATTAAAGATTGCCTATGAG GACGAAGAATTTGTAATTTTGCTGGAGAAAGGAGTTGTTCCTCATACTCGAEST: gi|27583381|gb|CB006076.1|CB006076
genomic: CAGGAGTCACAATTGAGGATTTGTACAAACAATTAAAGATTGCCTATGAGgtatttgttt ... ctcttttcagGACGAAGAATTTGTAATTTTGCTGGAGAAAGGAGTTGTTCCTCATACTCGA
EST: CAGGAGTCACAATTGAGGATTTGTACAAACAATTAAAGATTGCCTATGAG GACGAAGAATTTGTAATTTTGCTGGAGAAAGGAGTTGTTCCTCATACTCGA
genomic: CAGGAGTCACAATTGAGGATTTGTACAAACAATTAAAGATTGCCTATGAGgtatttgttt ... ctcttttcagGACGAAGAATTTGTAATTTTGCTGGAGAAAGGAGTTGTTCCTCATACTCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCCGTGGTATGCAATCAACTATATACGTGGAAATGACCCCAGGAGTCACAATTGAGGATTTGTACAAACAATTAAAGATTGCCTATGAGgtatttgtttcatgatgtgactttcacacactggtttcacttttaggggtctcattgattcacagccaatgttcacaaagaatagagcttcaaattcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaat