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ATATAACACATCCCACTCCCGATCTCACGGGTTATATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAGgtaaggttataaatcaacctcaagtttcctagttcatataattgatagtgatctggtacaatgattgtaaatgtggctccaaagtcgactggttctggtg...
species | Vitis vinifera |
transcript | Vv03s0038g02760.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ATATCACTGAGGGTCAGATTTACATTGACAGACAGCTCCACAATCGACAG ATATACCCACCAATCAATGTCCTGCCATCACTGTCTCGTTTAATGAAGEST: gi|110362645|gb|EC926192.1|EC926192
genomic: ATATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAGgtaaggttat ... aattgaacagATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG
EST: ATATCACTGAGGGTCAGATTTACATTGACAGACAGCTCCACAATCGACAG ATATACCCACCAATCAATGTCCTGCCATCACTGTCTCGTTTAATGAAGEST: gi|110357509|gb|EC921103.1|EC921103
genomic: ATATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAGgtaaggttat ... aattgaacagATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG
EST: ATATCACTGAGGGTCAGATTTACATTGACAGACAGCTCCACAATCGACAG ATATACCCACCAATCAATGTCCTGCCATCACTGTCTCGTTTAATGAAGEST: gi|110720101|gb|EE095728.1|EE095728
genomic: ATATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAGgtaaggttat ... aattgaacagATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG
EST: ATATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAG ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGEST: gi|110719306|gb|EE097131.1|EE097131
genomic: ATATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAGgtaaggttat ... aattgaacagATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG
EST: ATATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAG ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGEST: gi|22013013|gb|BQ798047.1|BQ798047
genomic: ATATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAGgtaaggttat ... aattgaacagATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG
EST: ATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAG ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGEST: gi|110712807|gb|EE088186.1|EE088186
genomic: ATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAGgtaaggttat ... aattgaacagATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG
EST: ATATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAG ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGEST: gi|30251466|gb|CB969199.1|CB969199
genomic: ATATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAGgtaaggttat ... aattgaacagATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG
EST: ATATCACTGAGGGTCAGATTTACATTGACAGACAGCTCCACAATCGACAG ATATACCCACCAATCAATGTCCTGCCATCACTGTCTCGTTTAATGAAGEST: gi|110690712|gb|EE068109.1|EE068109
genomic: ATATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAGgtaaggttat ... aattgaacagATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG
EST: ATATCACTGAGGGTCAGATTTACATTGACAGACAGCTCCACAATCGACAG ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGEST: gi|33402634|gb|CF208261.1|CF208261
genomic: ATATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAGgtaaggttat ... aattgaacagATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG
EST: ATATCACTGAGGGTCAGATTTACATTGACAGACAGCTCCACAATCGACAG ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGEST: gi|110723346|gb|EE100552.1|EE100552
genomic: ATATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAGgtaaggttat ... aattgaacagATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG
EST: ATATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAG ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGEST: gi|34542515|gb|CF510747.1|CF510747
genomic: ATATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAGgtaaggttat ... aattgaacagATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG
EST: ATATCACTGAGGGTCAGATTTACATTGACAGACAGCTCCACAATCGACAG ATATACCCACCAATCAATGTCCTGCCATCACTGTCTCGTTTAATGAAGEST: gi|349813104|gb|FQ411344.1|FQ411344
genomic: ATATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAGgtaaggttat ... aattgaacagATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG
EST: ATATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAG ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGEST: gi|110414446|gb|EC980278.1|EC980278
genomic: ATATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAGgtaaggttat ... aattgaacagATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG
EST: ATATCACTGAGGGTCAGATTTACATTGACAGACAGCTCCACAATCGACAG ATATACCCACCAATCAATGTCCTGCCATCACTGTCTCGTTTAATGAAGEST: gi|156737783|gb|EV241904.1|EV241904
genomic: ATATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAGgtaaggttat ... aattgaacagATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG
EST: ATATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAG ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGEST: gi|110376681|gb|EC941748.1|EC941748
genomic: ATATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAGgtaaggttat ... aattgaacagATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG
EST: ATATCACTGAGGGTCAGATTTACATTGACAGACAGCTCCACAATCGACAG ATATACCCACCAATCAATGTCCTGCCATCACTGTCTCGTTTAATGAAGEST: gi|110705729|gb|EE082911.1|EE082911
genomic: ATATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAGgtaaggttat ... aattgaacagATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG
EST: ATATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAG ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGEST: gi|110364580|gb|EC927938.1|EC927938
genomic: ATATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAGgtaaggttat ... aattgaacagATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG
EST: CTGAGGGTCAGATTTACATTGACAGACAGCTCCACAATCGACAG ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGEST: gi|30320892|gb|CD004154.1|CD004154
genomic: CTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAGgtaaggttat ... aattgaacagATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG
EST: TATCACTGAGGGCCAGATTTACA-TGNACAGACAGCTCCACAATCGACAG ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGEST: gi|34542425|gb|CF510657.1|CF510657
genomic: TATCACTGAGGGCCAGATTTACATTG-ACAGACAGCTCCACAATCGACAGgtaaggttat ... aattgaacagATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG
EST: ATATCACTGAGGGTCAGATTTACATTGACAGACAGCTCCACAATCGACAG ATATACCCACCAATCAATGTCCTGCCATCACTGTCTCGTTTAATGAAGEST: gi|30251540|gb|CB969273.1|CB969273
genomic: ATATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAGgtaaggttat ... aattgaacagATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG
EST: AGATTTACATTGACAGACAGCNT-CACAATCGACAG ATATACCCACCAATCAATGTCCTGCCATCACTGTCTCGTTTAATGAAGEST: gi|110687127|gb|EE064266.1|EE064266
genomic: AGATTTACATTGACAGACAGC-TCCACAATCGACAGgtaaggttat ... aattgaacagATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG
EST: ATATCACTGAGGGTCAGATTTACATTGACAGACAGCTCCACAATCGACAG ATATACCCACCAATCAATGTCCTGCCATCACTGTCTCGTTTAATGAAGEST: gi|27755418|gb|CB036173.1|CB036173
genomic: ATATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAGgtaaggttat ... aattgaacagATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG
EST: ATATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAG ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAGEST: gi|110424996|gb|EC991371.1|EC991371
genomic: ATATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAGgtaaggttat ... aattgaacagATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG
EST: ATATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAG ATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTTATGAAG
genomic: ATATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAGgtaaggttat ... aattgaacagATATACCCACCAATCAATGTCCTCCCATCACTGTCTCGTTTAATGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATAACACATCCCACTCCCGATCTCACGGGTTATATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAGgtaaggttataaatcaacctcaagtttcctagttcatataattgatagtgatctggtacaatgattgtaaatgtggctccaaagtcgactggttctggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatcaac