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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGACTCGCGAAGGAATGGCTACATTGGCTGCTCTGAATGTCCTGgtatgtgatcaaaatccaaaaaaaaggggaactgatacttatttttccaatcaaaaccattaacttctttatcaatccaaacaatag

Basic information

species Vitis vinifera
transcript Vv03s0038g02510.t01
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110693266|gb|EE069349.1|EE069349
EST:     TGGACTCGCGAAGGAATGGCTACATTGGCTGCTCTGAATGTCCTG                         GGAAAGATCAAAGGATACCCAATTTGGCATGATCCAAATAAGGTTGAACCA
genomic: TGGACTCGCGAAGGAATGGCTACATTGGCTGCTCTGAATGTCCTGgtatgtgatc ... caaacaatagGGAAAGATCAAAGGATACCCAATTTGGCATGATCCAAATAAGGTTGAACCA
EST: gi|22014105|gb|BQ799139.1|BQ799139
EST:     TGGACTCGCGAAGGAATGGCTACATTGGCTGCTCTGAATGTCCTG                         GGAAAGATCAAAGGATACCCAATTTGGCATGATCCAAATAAGGTTGAACCA
genomic: TGGACTCGCGAAGGAATGGCTACATTGGCTGCTCTGAATGTCCTGgtatgtgatc ... caaacaatagGGAAAGATCAAAGGATACCCAATTTGGCATGATCCAAATAAGGTTGAACCA
EST: gi|110422192|gb|EC988507.1|EC988507
EST:     TGGACTCGCGAAGGAATGGCTACATTGGCTGCTCTGAATGTCCTG                         GGAAAGATCAAAGGATACCCAATTTGGCATGATCCAAATAAGGTTGAACCA
genomic: TGGACTCGCGAAGGAATGGCTACATTGGCTGCTCTGAATGTCCTGgtatgtgatc ... caaacaatagGGAAAGATCAAAGGATACCCAATTTGGCATGATCCAAATAAGGTTGAACCA
EST: gi|110419053|gb|EC985245.1|EC985245
EST:     TGGACTCGCGAAGGAATGGCTACATTGGCTGCTCTGAATGTCCTG                         GGAAAGATCAAAGGATACCCAATTTGGCATGATCCAAATAAGGTTGAACCA
genomic: TGGACTCGCGAAGGAATGGCTACATTGGCTGCTCTGAATGTCCTGgtatgtgatc ... caaacaatagGGAAAGATCAAAGGATACCCAATTTGGCATGATCCAAATAAGGTTGAACCA
EST: gi|71867913|gb|DT016968.1|DT016968
EST:     TGGACTCGCGAAGGAATGGCTACATTGGCTGCTCTGAATGTCCTG                         GGAAAGATCAAAGGATACCCAATTTGGCATGATCCAA-TAAGGTTGA-CCA
genomic: TGGACTCGCGAAGGAATGGCTACATTGGCTGCTCTGAATGTCCTGgtatgtgatc ... caaacaatagGGAAAGATCAAAGGATACCCAATTTGGCATGATCCAAATAAGGTTGAACCA
EST: gi|110388512|gb|EC953270.1|EC953270
EST:     TGGACTCGCGAAGGAATGGCTACATTGGCTGCTCTGAATGTCCTG                         GGAAAGATCAAAGGATACCCAATTTGGCATGATCCAAATAAGGTTGAACCA
genomic: TGGACTCGCGAAGGAATGGCTACATTGGCTGCTCTGAATGTCCTGgtatgtgatc ... caaacaatagGGAAAGATCAAAGGATACCCAATTTGGCATGATCCAAATAAGGTTGAACCA
EST: gi|110694076|gb|EE070866.1|EE070866
EST:     TGGACTCGCGAAGGAATGGCTACATTGGCTGCTCTGAATGTCCTG                         GGAAAGATCAAAGGATACCCAATTTGGCATGATCCAAATAAGGTTGAACCA
genomic: TGGACTCGCGAAGGAATGGCTACATTGGCTGCTCTGAATGTCCTGgtatgtgatc ... caaacaatagGGAAAGATCAAAGGATACCCAATTTGGCATGATCCAAATAAGGTTGAACCA
EST: gi|110696054|gb|EE074775.1|EE074775
EST:     TGGACTCGCGAAGGAATGGCTACATTGGCTGCTCTGAATGTCCTG                         GGAAAGATCAAAGGATACCCAATTTGGCATGATCCAAATAAGGTTGAACCA
genomic: TGGACTCGCGAAGGAATGGCTACATTGGCTGCTCTGAATGTCCTGgtatgtgatc ... caaacaatagGGAAAGATCAAAGGATACCCAATTTGGCATGATCCAAATAAGGTTGAACCA
EST: gi|37188820|gb|CF608169.1|CF608169
EST:     TGGACTCGCGAAGGAATGGCTACATTGGCTGCTCTGAATGTCCTG                         GGAAAGATCAAAGGATACCCAATTTGGCATGATCCAAATAAGGTTGAACCA
genomic: TGGACTCGCGAAGGAATGGCTACATTGGCTGCTCTGAATGTCCTGgtatgtgatc ... caaacaatagGGAAAGATCAAAGGATACCCAATTTGGCATGATCCAAATAAGGTTGAACCA
EST: gi|22014743|gb|BQ799777.1|BQ799777
EST:     TGGACTCGCGAAGGAATGGCTACATTGGCTGCTCTGAATGTCCTG                         GGAAAGATCAAAGGATACCCAATTTGGCATGATCCAAATAAGGTTGAACCA
genomic: TGGACTCGCGAAGGAATGGCTACATTGGCTGCTCTGAATGTCCTGgtatgtgatc ... caaacaatagGGAAAGATCAAAGGATACCCAATTTGGCATGATCCAAATAAGGTTGAACCA
EST: gi|30136339|gb|CB921677.1|CB921677
EST:     GAAGGAATGGCTACATTGGCTGCTCTGAATGTCCTG                         GGAAAGATCAAAGGATACCCAATTTGGCATGATCCAAATAAGGTTGAACCA
genomic: GAAGGAATGGCTACATTGGCTGCTCTGAATGTCCTGgtatgtgatc ... caaacaatagGGAAAGATCAAAGGATACCCAATTTGGCATGATCCAAATAAGGTTGAACCA
EST: gi|110384301|gb|EC948729.1|EC948729
EST:     TGGACTCGCGAAGGAATGGCTACATTGGCTGCTCTGAATGTCCTG                         GGAAAGATCAAAGGATACCCAATTTGGCATGATCCAAATAAGGTTGAACCA
genomic: TGGACTCGCGAAGGAATGGCTACATTGGCTGCTCTGAATGTCCTGgtatgtgatc ... caaacaatagGGAAAGATCAAAGGATACCCAATTTGGCATGATCCAAATAAGGTTGAACCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGACTCGCGAAGGAATGGCTACATTGGCTGCTCTGAATGTCCTGgtatgtgatcaaaatccaaaaaaaaggggaactgatacttatttttccaatcaaaaccattaacttctttatcaatccaaacaatag

- - - - - AAGGAA
- - - - - - - - - - - - -  GCTGCT