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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAAATGTGATGTTGAAAGAATTCCCAGAGGATGAATTTGGCCCTGGGATCAATATTAGAGAATACTCTTTCTTTGACAATCCACTAATGCCCAAACAGgtatatcattagctgccacatttagagctcggattcaccatgttgttcctctttttatctccttatcttagtggaacttctcgtattttgatgtctgtttcag

Basic information

species Vitis vinifera
transcript Vv02s0087g00740.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0087g00740.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA11G09650.1 (Glycine max), 5'ss of exon 9
GTAAATGTGATGTTGAAAGAATTCCCAGAGGATGAATTTGGCCCTGGGATCAATATTAGAGAATACTCTTTCTTTGACAATCCACTAATGCCCAAACAGgtatatcattagctgccacatttagagctcggattcaccatgttg-ttcctctttttatctccttatcttagtggaacttctcgtattttgatgtctgtttcag
|||||||| |||||||||||| |||||||||| || |||||| ||||  |  ||||||| || |||||  |  |||| |||||     | |||  | ||||  || | |  |     |||  | |  |   |||    ||  |  || ||  || |||||| ||  || |    |    |  |  | ||||      ||||||
GTAAATGTCATGTTGAAAGAACTCCCAGAGGAAGAGTTTGGCTCTGGAGTAGATATTAGGGAGTACTCAATACTTGATAATCCCTCCCTCCCCTCAGAGgtgaataaatttcatttccatccacatttgaaattgtgaattctcctttcttgttgtatctcattcactaaactta-tgcccggggtcttgac-----tttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|56688584|gb|CX126487.1|CX126487
EST:     TCAATATTAGAGAATACTCTTTCTTTGACAATCCACTAATGCCCAATCAG                         GTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAGGATCCCCAGGT
genomic: TCAATATTAGAGAATACTCTTTCTTTGACAATCCACTAATGCCCAAACAGgtatatcatt ... tctgtttcagGTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAGGATCCCCAGGT
EST: gi|352773054|gb|FQ470669.1|FQ470669
EST:     TCAATATTAGAGAATACTCTTTCTTTGACAATCCACTAATGCCCAAACAG                         GTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAGGATCCCCAGGT
genomic: TCAATATTAGAGAATACTCTTTCTTTGACAATCCACTAATGCCCAAACAGgtatatcatt ... tctgtttcagGTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAGGATCCCCAGGT
EST: gi|110360771|gb|EC924133.1|EC924133
EST:     TCAATATTAGAGAATACTCTTTCTTTGACAATCCACTAATGCCCAAACAG                         GTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAGGATCCCCAGGT
genomic: TCAATATTAGAGAATACTCTTTCTTTGACAATCCACTAATGCCCAAACAGgtatatcatt ... tctgtttcagGTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAGGATCCCCAGGT
EST: gi|110702634|gb|EE078777.1|EE078777
EST:     ACTCTTTCTTTGACAATTCACTAATGCCCAAACAG                         GTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAAGATCCCCAGGT
genomic: ACTCTTTCTTTGACAATCCACTAATGCCCAAACAGgtatatcatt ... tctgtttcagGTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAGGATCCCCAGGT
EST: gi|56688689|gb|CX126592.1|CX126592
EST:     TCAATATTAGAGAATACTCTTTCTTTGACAATCCACTAATGCCCAATCAG                         GTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAGGATCCCCAGGT
genomic: TCAATATTAGAGAATACTCTTTCTTTGACAATCCACTAATGCCCAAACAGgtatatcatt ... tctgtttcagGTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAGGATCCCCAGGT
EST: gi|56688204|gb|CX126107.1|CX126107
EST:     TCAATATTAGAGAATACTCTTTCTTTGACAATCCACTAATGCCCAATCAG                         GTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAGGATCCCCAGGT
genomic: TCAATATTAGAGAATACTCTTTCTTTGACAATCCACTAATGCCCAAACAGgtatatcatt ... tctgtttcagGTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAGGATCCCCAGGT
EST: gi|34364071|gb|CF405656.1|CF405656
EST:     TCAATATTAGAGAATACTCTTTCTTTGACAATNCACTAATGCCCAAACAG                         GTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAGGATCCCCAGGT
genomic: TCAATATTAGAGAATACTCTTTCTTTGACAATCCACTAATGCCCAAACAGgtatatcatt ... tctgtttcagGTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAGGATCCCCAGGT
EST: gi|56688359|gb|CX126262.1|CX126262
EST:     TCAATATTAGAGAATACTCTTTCTTTGACAATCCACTAATGCCCAATCAG                         GTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAGGATCCCCAGGT
genomic: TCAATATTAGAGAATACTCTTTCTTTGACAATCCACTAATGCCCAAACAGgtatatcatt ... tctgtttcagGTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAGGATCCCCAGGT