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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGTTCTCATTTCAACTTCGTGATGGTCAACATCCCTTTAGCTTGTCAAACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgttattcttcatacataagatatgatcaagttcagtatactttcatcagatattatgtataatacttaaaccttgggccagtactggcttca...

Basic information

species Vitis vinifera
transcript Vv02s0025g04580.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g04580.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA09G27380.1 (Glycine max), 5'ss of exon 11
AATGTTCTCATTTCAACTTCGTGATGGTCAACATCCCTTTAGCTTGTCAAACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgttattcttcatacataagatatgatcaagttcagtatactttcatcagatattatgtataatacttaaacctt---gggccagtactggcttca-----
||||||||| || || ||||  || ||||||||||| |||| |||||||||||||| ||| |||||| ||||| | |  |||||||||   ||   ||||||| | | ||  ||   ||   ||||||||  ||    ||||  ||       | ||| | || | |||     | | | ||     ||   |  ||   | |     
AATGTTCTCCTTCCACCTTCAAGAGGGTCAACATCCTTTTAACTTGTCAAACATTGTAACAGTGATGAATGTTTCAGACAAGTTGAAGCAGAGAGTTGAGgta-tgtagtctttaaccacttataagata-aattggcttcatcatc------taagaaactacgcatatagggtgaccttttcaatgcaccttatgaagttaaggtg

upper sequence: Vv02s0025g04580.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA16G32480.1 (Glycine max), 5'ss of exon 11
AATGTTCTCATTTCAACTTCGTGATGGTCAACATCCCTTTAGCTTGTCAAACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactc--tcgttattc-ttcatacataagatatgatcaagttc--agtatactttcatcagatattat-gtataatacttaaaccttgggccagtactggcttca
||||||||| || || ||||  || ||||||||||| |||| |||||||||||||| ||| |||||| ||||| | |  |||||||||   ||   |||||||  |  || |||  |  | ||   | |    | ||| | ||   | | || ||| |   || | |   || ||| |   ||| |||   |  | | | |     
AATGTTCTCCTTCCAGCTTCAAGAGGGTCAACATCCGTTTAACTTGTCAAACATTGTAACAGTGATGAATGTTTCGGACAAGTTGAAGCAGAGAGTTGAGgtatgcagtctttaaccacttattagtgaatgctaatctaattacaaatgtagtttaaaaggaaactgcagtttaaaagaaaaatctt---catgaattcgtc---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30134727|gb|CB920065.1|CB920065
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|34318974|gb|CF371728.1|CF371728
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|33403076|gb|CF208703.1|CF208703
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|110696550|gb|EE072775.1|EE072775
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|110362550|gb|EC926093.1|EC926093
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|32457010|gb|CD798184.1|CD798184
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|32456926|gb|CD798100.1|CD798100
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|71880675|gb|DT029730.1|DT029730
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|71864507|gb|DT013562.1|DT013562
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|30328852|gb|CD012114.1|CD012114
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|110412104|gb|EC977839.1|EC977839
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|32457034|gb|CD798208.1|CD798208
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|30328525|gb|CD011787.1|CD011787
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|110697826|gb|EE075245.1|EE075245
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|110359996|gb|EC922449.1|EC922449
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|33403214|gb|CF208841.1|CF208841
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|30132689|gb|CB918028.1|CB918028
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|30305534|gb|CB982328.1|CB982328
EST:     GGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: GGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|352777935|gb|FQ466988.1|FQ466988
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|87584077|gb|DY473370.1|DY473370
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|110357879|gb|EC921692.1|EC921692
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|110700589|gb|EE077386.1|EE077386
EST:     CAAGGCATGAT                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: CAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|22008404|gb|BQ793438.1|BQ793438
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|110696636|gb|EE072924.1|EE072924
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|83275967|gb|DV939975.1|DV939975
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCAAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|45770667|gb|CN006519.1|CN006519
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|30137225|gb|CB922563.1|CB922563
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|110377475|gb|EC942541.1|EC942541
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|110376736|gb|EC941809.1|EC941809
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|352794808|gb|FQ475303.1|FQ475303
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|45770657|gb|CN006509.1|CN006509
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|34545354|gb|CF513586.1|CF513586
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|30255490|gb|CB971622.1|CB971622
EST:     CCATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|22011733|gb|BQ796767.1|BQ796767
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|110391755|gb|EC956755.1|EC956755
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|22009851|gb|BQ794885.1|BQ794885
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|33401561|gb|CF207188.1|CF207188
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|33405731|gb|CF211358.1|CF211358
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|22007493|gb|BQ792527.1|BQ792527
EST:     ACACTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|110369148|gb|EC933295.1|EC933295
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|110699075|gb|EE077301.1|EE077301
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|110361435|gb|EC924904.1|EC924904
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|22011313|gb|BQ796347.1|BQ796347
EST:     TGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: TGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|30251503|gb|CB969236.1|CB969236
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|352777480|gb|FQ474108.1|FQ474108
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|110728981|gb|EE105086.1|EE105086
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|22015505|gb|BQ800539.1|BQ800539
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|110361381|gb|EC924849.1|EC924849
EST:     ACATTGCAATTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|33402990|gb|CF208617.1|CF208617
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|352778069|gb|FQ467122.1|FQ467122
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|22012577|gb|BQ797611.1|BQ797611
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|110717038|gb|EE092546.1|EE092546
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|110363434|gb|EC927021.1|EC927021
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|110373154|gb|EC937368.1|EC937368
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|110427608|gb|EC994056.1|EC994056
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|22011371|gb|BQ796405.1|BQ796405
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|110361187|gb|EC924641.1|EC924641
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|161720421|gb|FC070201.1|FC070201
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACA
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACA
EST: gi|30131017|gb|CB916356.1|CB916356
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|110410530|gb|EC976213.1|EC976213
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|110373735|gb|EC938045.1|EC938045
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|110715762|gb|EE094179.1|EE094179
EST:     ACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAG-AAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|110417178|gb|EC983212.1|EC983212
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|71862332|gb|DT011387.1|DT011387
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|110378004|gb|EC943112.1|EC943112
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
EST: gi|33403125|gb|CF208752.1|CF208752
EST:     ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAG                         TTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT
genomic: ACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgt ... gtttgtgcagTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATGTTCTCATTTCAACTTCGTGATGGTCAACATCCCTTTAGCTTGTCAAACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGgtactctcgttattcttcatacataagatatgatcaagttcagtatactttcatcagatattatgtataatacttaaaccttgggccagtactggcttca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG