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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCACCCTTTTGTTAGAAATGCTGCGCCTCTGGAAAGACCTAGTCTTAGTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATGgtatggacataactaccaagcattcatgttattcttttgtgtctttgctgctgctgttctcaatatgtctctaagttgcatatcctgactgttcttgttc...

Basic information

species Vitis vinifera
transcript Vv02s0025g03370.t01
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349822931|gb|FQ399910.1|FQ399910
EST:     GTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATG                         GCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCAT
genomic: GTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATGgtatggacat ... gatctattagGCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCAT
EST: gi|351026069|gb|FQ428081.1|FQ428081
EST:     GTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATG                         GCCATTGGACACACGAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCAT
genomic: GTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATGgtatggacat ... gatctattagGCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCAT
EST: gi|349829212|gb|FQ419744.1|FQ419744
EST:     GTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATG                         GCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCAT
genomic: GTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATGgtatggacat ... gatctattagGCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCAT
EST: gi|27584138|gb|CB006833.1|CB006833
EST:     GTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATG                         GCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCAT
genomic: GTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATGgtatggacat ... gatctattagGCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCAT
EST: gi|110699701|gb|EE076931.1|EE076931
EST:     GTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATG                         GCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCAT
genomic: GTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATGgtatggacat ... gatctattagGCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCAT
EST: gi|349817348|gb|FQ405352.1|FQ405352
EST:     GTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATG                         GCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCAT
genomic: GTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATGgtatggacat ... gatctattagGCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCAT
EST: gi|351054267|gb|FQ450349.1|FQ450349
EST:     GTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATG                         GCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCAT
genomic: GTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATGgtatggacat ... gatctattagGCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCAT
EST: gi|351028430|gb|FQ427326.1|FQ427326
EST:     GTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATG                         GCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCAT
genomic: GTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATGgtatggacat ... gatctattagGCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAGCACCCTTTTGTTAGAAATGCTGCGCCTCTGGAAAGACCTAGTCTTAGTTCTGAGCTTGAACCACCACCTGCAGTTACAAATGCTGTCAGATCCATGgtatggacataactaccaagcattcatgttattcttttgtgtctttgctgctgctgttctcaatatgtctctaagttgcatatcctgactgttcttgttc

- - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG