Sequence
atgc intronic sequence ATGC exonic sequenceGATGTCAAATTATTGGTTGAAGACATTGGGGAGCTAAAACCGACTATTTTCTGTGCTGTTCCTCGCGTATTAGATAGGATATATTCAGgtgcaaattttttcttacatttgaatgtgctaattgagtctaattctgtatctttttccaagtataataatcaatcagagaaacacttgcatcagaatca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os01g48910.1 (Oryza sativa), 5'ss of exon 11
GATGTCAAATTATTGGTTGAAGACATTGGGGAGCTAAAACCGACTATTTTCTGTGCTGTTCCTCGCGTATTAGATAGGATATATTCAGgtgcaaattttt---tcttacatttgaatgtgctaattg-agtctaattctgtatctttttccaagtataat--aatcaatcagagaaacacttgcatcagaatca--------------
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GATGTCAAACTCTTGGTTGAAGACATTGGAGAACTCAAGCCAACAATTTTCTGCGCTGTTCCACGTGTACTAGACAGAATTTATGGAGgtactgcatttgaaataataaattttaacctcgcagccatagatatgtagtgataatgtacattaatgcaattcagccattcaggtagatattaatg-cacaattgcttctatgattcag
upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G152127_T01 (Zea mays), 5'ss of exon 11
GATGTCAAATTATTGGTTGAAGACATTGGGGAGCTAAAACCGACTATTTTCTGTGCTGTTCCTCGCGTATTAGATAGGATATATTCAGgt-----gcaaatttttt---cttacatttgaatgtgctaattgagtctaat-tctgtat-ctttttccaagtataataatcaatcagagaaacac---ttgcatca--gaatca-
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GATGTCAAACTCTTGGTTGAAGACATTGGAGAACTCAAACCAACAGTTTTTTGTGCTGTTCCACGTGTTCTAGACAGAATTTATGGAGgtatactgcaaattgattaaatattctttttaccgtgccttctagaagaaatattcatatactgttgtgttattcaaattttaatcaggtactgatgttttatttcactgattcag
upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA01G43470.4 (Glycine max), 5'ss of exon 11
GATGTCAAATTATTGGTTGAAGACATTGGGGAGCTAAAACCGACTATTTTCTGTGCTGTTCCTCGCGTATTAGATAGGATATATTCAGgtgcaaattttttcttacatttgaatgtgctaattgagtctaattctgtatctttttccaagtataataatcaatcagagaaacacttgcatcagaatca
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GATGTCAAATTGTTAATTGAAGATGTTGGCGAACTAAAACCAACTATTTTCTGTGCTGTTCCCCGTGTGCTTGATAGAGTGTACTCAGgtaaactcatgaaaattctcattattgttgacagtttgatgatctttccataatcatataattttgatggtaaaattatgatttcagtaggacaaagcta
upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA11G02030.1 (Glycine max), 5'ss of exon 11
GATGTCAAATTATTGGTTGAAGACATTGGGGAGCTAAAACCGACTATTTTCTGTGCTGTTCCTCGCGTATTAGATAGGATATATTCAGgtgcaaattttttcttacatttgaatgtgctaattgagtctaattctgtatctttttccaagtataataatcaatcagagaaacacttgcatcagaatca-----
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GATGTCAAATTGTTAATTGATGATGTTGGGGAACTAAAACCAACTATTTTCTGTGCTGTTCCCCGTGTGCTTGATAGAGTGTACTCAGgt--aaactcttgaaaattctcatgatttttgac--agtttgatgatctttccataatcatataatcttgatggtaaaattattattt-cagtaggacaaagcta
upper sequence: Vv02s0025g01410.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT4G11030.1 (Arabidopsis thaliana), 5'ss of exon 11
GATGTCAAATTATTGGTTGAAGACATTGGGGAGCTAAAACCGACTATTTTCTGTGCTGTTCCTCGCGTATTAGATAGGATATATTCAGgtgcaaattttttctta--catttgaatgtgctaattgagtctaattctg--tatctttttccaagtataataa--tcaatcagagaaacacttgcatcagaatca-----------
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GATGTCAAATTGTTGATTGAAGACCTTGGTGAGCTAAAACCAAGTATCTTTTGCGCCGTTCCTCGTGTCCTAGATCGAGTATACACAGgtatcaaatatttctcgagctcttgtataaaatgctttcatccaatgaagagcatcatatacttggtttcataagttcaaacccacttatatgtaatttattatatatctccaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|351028751|gb|FQ433181.1|FQ433181EST: ACCAACTATTTTCTGTGCTGTTCCTCGCGTATTAGATAGGATATATTCAG GTTTGAAACAGAAGATTTCTGCAGGTGGTTTATTGAGAAATACACTGTTCA
genomic: ACCGACTATTTTCTGTGCTGTTCCTCGCGTATTAGATAGGATATATTCAGgtgcaaattt ... atatttccagGTTTGAAACAGAAGATTTCTGCAGGTGGTTTATTGAGAAATACACTGTTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATGTCAAATTATTGGTTGAAGACATTGGGGAGCTAAAACCGACTATTTTCTGTGCTGTTCCTCGCGTATTAGATAGGATATATTCAGgtgcaaattttttcttacatttgaatgtgctaattgagtctaattctgtatctttttccaagtataataatcaatcagagaaacacttgcatcagaatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agagaaa