1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TAAGCAGAGGTTGGTGCTTTATCATGGTGTGATGCCTATATTTATGCAGTTTTCAGATGATGCTGAGGAGACCTTCTCTCGAGCCCTCAGCATACTAGTGgttagtgtttttcttatttttttcattctctttatgctcagatcattacttcatgttgttaagtgtctccaaatttttcatgtgtag
species | Vitis vinifera |
transcript | Vv02s0012g01170.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TTTCAGATGATGCTGANGAGACCTTCTCTCGAGCCCTCAGCATACTAGTG AAACANGGGCCTAATGAAGGAGGNAGAGCATGTGACTCTTGTTCAAAGTGGEST: gi|30131201|gb|CB916540.1|CB916540
genomic: TTTCAGATGATGCTGAGGAGACCTTCTCTCGAGCCCTCAGCATACTAGTGgttagtgttt ... tcatgtgtagAA-CAAGGGCCTAATGAAGGAGGGAGAGCATGTGACTCTTGTTCAAAGTGG
EST: TTTCAGATGATGCTGAGGAGACCTTCTCTCGAGCCCTCAGCATACTAGTG AACAAGGGCCTAATGAAGGAGGGAGAGCATGTGACTCTTGTTCAAAGTGGA
genomic: TTTCAGATGATGCTGAGGAGACCTTCTCTCGAGCCCTCAGCATACTAGTGgttagtgttt ... tcatgtgtagAACAAGGGCCTAATGAAGGAGGGAGAGCATGTGACTCTTGTTCAAAGTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAGCAGAGGTTGGTGCTTTATCATGGTGTGATGCCTATATTTATGCAGTTTTCAGATGATGCTGAGGAGACCTTCTCTCGAGCCCTCAGCATACTAGTGgttagtgtttttcttatttttttcattctctttatgctcagatcattacttcatgttgttaagtgtctccaaatttttcatgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA