1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
ATTGCAGTGTCAAAGCATGAGCACTGGTCATCTTTAGCTCCTCTTCCTTTTGAAGTTGTTATTTCTGCTGGACAAAAAGCTAAAGAGGAGTGGAGACGAGgctagtaatccctttttgatctttgctcttaatgactttctccttttttactgtggcaaaaactggagtaattggttcttgcactttcattgagagtcgcaatactctttcataattgtatcatctctacttgatcaacttgtcaaacctttccacttaaaacattgagcag
species | Vitis vinifera |
transcript | Vv01s0244g00070.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: TGAAGTTGTTATTTCTGCTGGACAAAAAGCTAAAGAGGAGTGGAGACGAG GTGAGGATGATCCTGAGACAAGGAGCAAACTGGTTCAGGACTTGAATGATCEST: gi|30256328|gb|CB972171.1|CB972171
genomic: TGAAGTTGTTATTTCTGCTGGACAAAAAGCTAAAGAGGAGTGGAGACGAGgctagtaatc ... cattgagcagGTGAGGATGATCCTGAGACAAGGAGCAAACTGGTTCAGGACTTGAATGATC
EST: TGAAGTTGTTATTTCTGCTGGACAAAAAGCTAAAGAGGAGTGGAGACGAG GTGAGGATGATCCTGAGACAAGGAGCAAACTGGTTCAGGACTTGAATGATCEST: gi|30256262|gb|CB972105.1|CB972105
genomic: TGAAGTTGTTATTTCTGCTGGACAAAAAGCTAAAGAGGAGTGGAGACGAGgctagtaatc ... cattgagcagGTGAGGATGATCCTGAGACAAGGAGCAAACTGGTTCAGGACTTGAATGATC
EST: TGAAGTTGTTATTTCTGCTGGACAAAAAGCTAAAGAGGAGTGGAGACGAG GTGAGGATGATCCTGAGACAAGGAGCAAACTGGTTCAGGACTTGAATGATCEST: gi|352768717|gb|FQ467929.1|FQ467929
genomic: TGAAGTTGTTATTTCTGCTGGACAAAAAGCTAAAGAGGAGTGGAGACGAGgctagtaatc ... cattgagcagGTGAGGATGATCCTGAGACAAGGAGCAAACTGGTTCAGGACTTGAATGATC
EST: AGAGGAGTGGAGACGAG GTGAGGATGATCCTGAGACAAGGAGCAAACTGGTTCAGGACTTGAATGATC
genomic: AGAGGAGTGGAGACGAGgctagtaatc ... cattgagcagGTGAGGATGATCCTGAGACAAGGAGCAAACTGGTTCAGGACTTGAATGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGCAGTGTCAAAGCATGAGCACTGGTCATCTTTAGCTCCTCTTCCTTTTGAAGTTGTTATTTCTGCTGGACAAAAAGCTAAAGAGGAGTGGAGACGAGgctagtaatccctttttgatctttgctcttaatgactttctccttttttactgtggcaaaaactggagtaattggttcttgcactttcattgagagtcgcaatactctttcataattgtatcatctctacttgatcaacttgtcaaacctttccacttaaaacattgagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA