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GTTGAAAAACAAGAGTTTGGGCTTAAGCCAATGAATTGCCCAGGGCACTGTTTGATGTTTGAACATAGAGTTCGTTCATATAGAGgtgagtgcatttggttccttatatatttatcttaaatagcataacatggtgcttttttgctcttcaaggctccatcctagattgaggcaaactaaaattt...
species | Vitis vinifera |
transcript | Vv01s0026g00340.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GTTCATATAGAG AACTTCCTCTTCGGCTAGCCGATTTTGGGGTCTTGCATCGAAATGAAGCCAEST: gi|30325105|gb|CD008367.1|CD008367
genomic: GTTCATATAGAGgtgagtgcat ... ggttttgcagAACTTCCTCTTCGGCTAGCCGATTTTGGGGTCTTGCATCGAAATGAAGCCA
EST: GTTCATATAGAG AACTTCCTCTTCGGCTAGCCGATTTTGGGGTCTTGCATCGAAATGAAGCCAEST: gi|32268540|gb|CD717699.1|CD717699
genomic: GTTCATATAGAGgtgagtgcat ... ggttttgcagAACTTCCTCTTCGGCTAGCCGATTTTGGGGTCTTGCATCGAAATGAAGCCA
EST: GTTCATATAGAG AACTTCCTCTTCGGCTAGCCGATTTTGGGGTCTTGCATCGAAATGAAGCCAEST: gi|30323442|gb|CD006704.1|CD006704
genomic: GTTCATATAGAGgtgagtgcat ... ggttttgcagAACTTCCTCTTCGGCTAGCCGATTTTGGGGTCTTGCATCGAAATGAAGCCA
EST: GTTCATATAGAG AACTTCCTCTTCGGCTAGCCGATTTTGGGGTCTTGCATCGAAATGAAGCCAEST: gi|32249386|gb|CD715205.1|CD715205
genomic: GTTCATATAGAGgtgagtgcat ... ggttttgcagAACTTCCTCTTCGGCTAGCCGATTTTGGGGTCTTGCATCGAAATGAAGCCA
EST: GTTCATATAGAG AACTTCCTCTTCGGCTAGCCGATTTTGGGGTCTTGCATCGAAATGAAGCCAEST: gi|156735898|gb|EV240019.1|EV240019
genomic: GTTCATATAGAGgtgagtgcat ... ggttttgcagAACTTCCTCTTCGGCTAGCCGATTTTGGGGTCTTGCATCGAAATGAAGCCA
EST: TTGCCCAGGGCACTGTTTGATGTTTGAACATAGAGTTCGTTCATATAGAG AACTTCCTCTTCGGCTAGCCGATTTTGGGGTCTTGCATCGAAATGAAGCCAEST: gi|30327091|gb|CD010353.1|CD010353
genomic: TTGCCCAGGGCACTGTTTGATGTTTGAACATAGAGTTCGTTCATATAGAGgtgagtgcat ... ggttttgcagAACTTCCTCTTCGGCTAGCCGATTTTGGGGTCTTGCATCGAAATGAAGCCA
EST: GTTCATATAGAG AACTTCCTCTTCGGCTAGCCGATTTTGGGGTCTTGCATCGAAATGAAGCCA
genomic: GTTCATATAGAGgtgagtgcat ... ggttttgcagAACTTCCTCTTCGGCTAGCCGATTTTGGGGTCTTGCATCGAAATGAAGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGAAAAACAAGAGTTTGGGCTTAAGCCAATGAATTGCCCAGGGCACTGTTTGATGTTTGAACATAGAGTTCGTTCATATAGAGgtgagtgcatttggttccttatatatttatcttaaatagcataacatggtgcttttttgctcttcaaggctccatcctagattgaggcaaactaaaattt
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggcaaa