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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATTCCTCCTCGAAACCCTGTGATTGTGTATCGGTTGATCTTGTGGTGGCTAATTGCAATACCAACAATTCGTGAGTACAATTCATACTTACAGGACAGgtactatctctccttgcttatttgcaaatattatacttgatactaagaatgccaaccagcattagtgtgcatatagttcaaatttttcttacattttggtaaatgttgtgtcgttcttcag

Basic information

species Vitis vinifera
transcript Vv01s0011g04370.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G095757_T01 (Zea mays), 5'ss of exon 11
GGATTCCTCCTCGAAACCCTGTGATTGTGTATCGGTTGATCTTGTGGTGGCTAATTGCAATACCAACAATTCGTGAGTACAATTCATACTTACAGGACAGgtactatctctccttgcttatttgcaaatattatacttgatactaaga-atgccaaccagcattagtgtgcatatagttcaaatttttcttacattttggtaaatgttgtgtcgttcttcag
|||||||||| || |||||| || | |||||||||||| || | |||||| |||| || ||||| || || || ||||||||| | ||||| || ||||||||  || |          ||| |      | | |||| |  ||          || ||| ||     ||   || |  ||  |       ||||  | || | |                 
GGATTCCTCCGCGGAACCCTTTGGTCGTGTATCGGTTGGTCCTTTGGTGGTTAATCGCGATACCGACCATCCGGGAGTACAATACCTACTTGCAAGACAGgtataattttgaagccacgattggt-----tcagacttaaagctgctttgcagtaatcagtatgcagttggggatggcccatttcacctcaacatcattgttatt-----------------

upper sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA20G25830.2 (Glycine max), 5'ss of exon 12
GGATTCCTCCTCGAAACCCTGTGATTGTGTATCGGTTGATCTTGTGGTGGCTAATTGCAATACCAACAATTCGTGAGTACAATTCATACTTACAGGACAGgtactatctctccttgcttatttgcaaatattatacttg-atactaagaatgccaaccagcattagtgtgcatatagt--tcaaatttttcttacattttggtaaatgttgtgtcgttcttcag---------------------------------------
|||| |||||||||||  | ||  || | ||| ||||||| |||||||||||| |||| || |||||||||||||||||||| |||||| | || |||||||||  |||       ||   |||      |   ||    |  | ||  | | ||        |  | ||||||  ||  | ||  ||     |     | | |||| |  |       ||  |                                       
GGATACCTCCTCGAAATTCGGTTGTTATATATAGGTTGATTTTGTGGTGGCTACTTGCGATTCCAACAATTCGTGAGTACAACTCATACCTTCAAGACAGgtacagtcttctgcatctctcttgtttccctcccacccctacccaaaagaagtcatatttttctgttttgcatagtgtgtttaatgttgatgaatgacattggaaatatcctactaagattttgacattttttcctgtcatatattcgttgtgaatttttcag

upper sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA10G41430.1 (Glycine max), 5'ss of exon 11
GGATTCCTCCTCGAAACCCTGTGATTGTGTATCGGTTGATCTTGTGGTGGCTAATTGCAATACCAACAATTCGTGAGTACAATTCATACTTACAGGACAGgtactatctctccttgcttatttgcaaatattatacttg-atactaagaatgcca-accagcattagtgtgcatatagttcaa-atttttcttacattttggtaaatgttgtgtcgttcttcag
|||| |||||||||||  | ||  || | ||| ||||||| |||||||||||| |||| || ||||||||||| |||||||| |||||| | || |||||||||  | |       ||   | |      |   ||    |  | ||  | | || |   |   ||   | |  | | ||  | ||||||    |||     ||    |||||   || |||||
GGATACCTCCTCGAAATTCAGTTGTTATATATAGGTTGATTTTGTGGTGGCTACTTGCGATTCCAACAATTCGCGAGTACAACTCATACCTTCAAGACAGgtacatttttctgcatctctctcgtttccctcccacccctacccaaaagaagtcacattggagatatcctaccaaaattttgacattttttcctcat----atattccttgtgat-tttttcag

upper sequence: Vv01s0011g04370.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT1G15110.2 (Arabidopsis thaliana), 5'ss of exon 11
GGATTCCTCCTCGAAACCCTGTGATTGTGTATCGGTTGATCTTGTGGTGGCTAATTGCAATACCAACAATTCGTGAGTACAATTCATACTTACAGGACAGgta---ctatctctccttgcttatttgcaaatattatacttgatactaagaatgccaaccagcattagtgtgcatatagttcaaatttttcttacattttggtaaatgttgtgtcgttcttcag
|||| || ||||||||||| |||||| | ||| || |||||||||||||||| || || ||||||||||  || ||||||||||||||  | || ||||||||   ||||  |  ||    |||| |      |||   | ||    |||| |       |  | | ||||      ||||    || |||  |                              
GGATCCCCCCTCGAAACCCAGTGATTCTCTATAGGCTGATCTTGTGGTGGCTCATAGCGATACCAACAACACGGGAGTACAATTCATATCTTCAAGACAGgtaaagctatagccactgcgatattggttggagttagtttgga----aagagttttgtatataacttgtgt------agttttggttgttcacag-----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110360098|gb|EC922718.1|EC922718
EST:     CTAATTGCAATACCAACAATTCGTGAGTACAATTCATACTTACAGGACAG                         AAAACCAGTGAAAAAGGTGGGAGCGTTTTGTTGGCTTTCCCTTGCTATTTG
genomic: CTAATTGCAATACCAACAATTCGTGAGTACAATTCATACTTACAGGACAGgtactatctc ... cgttcttcagAAAACCAGTGAAAAAGGTGGGAGCGTTTTGTTGGCTTTCCCTTGCTATTTG