1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GAACAAAATCTCTAGGCAGACTGGGATTGGAACTGCAATAGCCATTGCTGGTGTTGCCATTTACTCCCTCATAAAGGCAAACATTGAAGAGCAAAAACGGgtaagattttatcacatggctgagcacttttaccttaaaaggtatttttaaagaaaaattatgggttcatacaaaaagttagaaaataccttttttttat...
species | Vitis vinifera |
transcript | Vv01s0011g00600.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GTGTTGCCATTTACTCCCTCATAAAGGCAAACATTGAAGAGCAAAAACGG AAAGCTGCTGTAACTCCAGCATCATAGAGCTATCGAATCTATCCTACCCACEST: gi|34362742|gb|CF404327.1|CF404327
genomic: GTGTTGCCATTTACTCCCTCATAAAGGCAAACATTGAAGAGCAAAAACGGgtaagatttt ... gctacttcagAAAGCTGCTGTAACTCCAGCATCATAGAGCTATCGAATCTATCCTACCCAC
EST: GTGTTCCCATTTACTCCCTCATAAAGGCAAACATTGAAGAGCAAAAACGG AAAGCTGCTGTAACTCCAGCATCATAGAGCTATCGAATCTATCCTACCCACEST: gi|71884544|gb|DT033599.1|DT033599
genomic: GTGTTGCCATTTACTCCCTCATAAAGGCAAACATTGAAGAGCAAAAACGGgtaagatttt ... gctacttcagAAAGCTGCTGTAACTCCAGCATCATAGAGCTATCGAATCTATCCTACCCAC
EST: GTGTTGCCATTTACTCCCTCATAAAGGCAAACATTGAAGAGCAAAAACGG AAAGCTGCTGTAACTCCAGCATCATAGAGCTATCGAATCTATCCTACCCACEST: gi|34362625|gb|CF404210.1|CF404210
genomic: GTGTTGCCATTTACTCCCTCATAAAGGCAAACATTGAAGAGCAAAAACGGgtaagatttt ... gctacttcagAAAGCTGCTGTAACTCCAGCATCATAGAGCTATCGAATCTATCCTACCCAC
EST: GTGTTGCCATTTACTCCCTCATAAAGGCAAACATTGAAGAGCAAAAACGG AAAGCTGCTGTAACTCCAGCATCATAGAGCTATCGAATCTATCCTACCCACEST: gi|110365764|gb|EC929197.1|EC929197
genomic: GTGTTGCCATTTACTCCCTCATAAAGGCAAACATTGAAGAGCAAAAACGGgtaagatttt ... gctacttcagAAAGCTGCTGTAACTCCAGCATCATAGAGCTATCGAATCTATCCTACCCAC
EST: GTGTTGCCATTTACTCCCTCATAAAGGCAAACATTGAAGAGCAAAAACGG AAAGCTGCTGTAACTCCAGCATCATAGAGCTATCGAATCTATCCTACCCACEST: gi|34363556|gb|CF405141.1|CF405141
genomic: GTGTTGCCATTTACTCCCTCATAAAGGCAAACATTGAAGAGCAAAAACGGgtaagatttt ... gctacttcagAAAGCTGCTGTAACTCCAGCATCATAGAGCTATCGAATCTATCCTACCCAC
EST: GTGTTGCCATTTACTCCCTCATAAAGGCAAACATTGAAGAGCAAAAACGG AAAGCTGCTGTAACTCCAGCATCATAGAGCTATCGAATCTATCCTACCCACEST: gi|22012480|gb|BQ797514.1|BQ797514
genomic: GTGTTGCCATTTACTCCCTCATAAAGGCAAACATTGAAGAGCAAAAACGGgtaagatttt ... gctacttcagAAAGCTGCTGTAACTCCAGCATCATAGAGCTATCGAATCTATCCTACCCAC
EST: GTGTTGCCATTTACTCCCTCATAAAGGCAAACATTGAAGAGCAAAAACGG AAAGCTGCTGTAACTCCAGCATCATAGAGCTATCGAATCTATCCTACCCAC
genomic: GTGTTGCCATTTACTCCCTCATAAAGGCAAACATTGAAGAGCAAAAACGGgtaagatttt ... gctacttcagAAAGCTGCTGTAACTCCAGCATCATAGAGCTATCGAATCTATCCTACCCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACAAAATCTCTAGGCAGACTGGGATTGGAACTGCAATAGCCATTGCTGGTGTTGCCATTTACTCCCTCATAAAGGCAAACATTGAAGAGCAAAAACGGgtaagattttatcacatggctgagcacttttaccttaaaaggtatttttaaagaaaaattatgggttcatacaaaaagttagaaaataccttttttttat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaata