Sequence
atgc intronic sequence ATGC exonic sequenceTAGGGCTGGAGCAATGGGTCTGAAGCTGCATGAGGACTGGGGAACTACTCCTGCTGCAATAGATAATTGTTTGACTGTTGCAGAACAATATGACATCCAGgttattttattttatttatttatttaaacttttatgttacttgcagttgtagctagttttcttactttctgttacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G461569_T01 (Zea mays), 5'ss of exon 11
TAGGGCTGGAGCAATGGGTCTGAAGCTGCATGAGGACTGGGGAACTACTCCTGCTGCAATAGATAATTGTTTGACTGTTGCAGAACAATATGACATCCAGgt---tattttattttatttatttatttaaacttttatgttacttgcagttgtagctagttttcttactttctgttacag
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TAAAGCTGGAGCAATGGGTTTGAAGCTGCATGAAGATTGGGGAACTACCCCATCCGCGATAGATAATTGTTTATCTGTTGCAGAAGATTTTGATATTCAGgtaagtgtctaatgttatctagtc-tttatggtatattgtggtttatttattttaatgtttacctgattttg----acag
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA11G37250.1 (Glycine max), 5'ss of exon 12
TAGGGCTGGAGCAATGGGTCTGAAGCTGCATGAGGACTGGGGAACTACTCCTGCTGCAATAGATAATTGTTTGACTGTTGCAGAACAATATGACATCCAGgtt--attttattttatttatttatttaa--acttttatgttacttgcagttgtagctagttttcttactttctgttacag
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CAGGGCTGGAGCTATGGGACTGAAGCTGCATGAGGACTGGGGAACTACACCGGCTGCAATAGACAGTTGTTTGACAGTTGCAGACCAATATGATATCCAGgcacaactttcttcaatatttccacttatttacctttttgttacttttgttaatttttgttgtgaacttgtattataacag
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA05G27840.1 (Glycine max), 5'ss of exon 11
TAGGGCTGGAGCAATGGGTCTGAAGCTGCATGAGGACTGGGGAACTACTCCTGCTGCAATAGATAATTGTTTGACTGTTGCAGAACAATATGACATCCAGgt----tattttattttatttatttatttaaacttttatgttacttgcagttgtagctagttttcttactttctgttacag
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CAAGGCTGGAGCAATGGGACTGAAGCTGCATGAGGACTGGGGAAGTACTCCCGCTGCAATAGACAGTTGCTTGACTGTTGCTGATCAATACGATATCCAGgcacaacattcttcattacattttcttttgtaatttt----tatcaatatctgctgctaacttttatgattacag------
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA08G10850.1 (Glycine max), 5'ss of exon 11
--------------------------------------TAGGGCTGGAGCAATGGGTCTGAAGCTGCATGAGGACTGGGGAACTACTCCTGCTGCAATAGATAATTGTTTGACTGTTGCAGAACAATATGACATCCAGgttattttattttatttatttatttaaacttttatgttacttgcagttgtagctagttttcttactttctgttacag
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GGGAGTAGTTCCAAGCCTGATGAACTGCATGAAATAATCAAGGCTGGAGCAATGGGGCTGAAGCTGCATGAGGACTGGGGAAgtgcttccgcagcaatagacagttgct-----------gatcaatatgatatccag-----------------------------------------------------------------------------
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT1G67550.1 (Arabidopsis thaliana), 5'ss of exon 11
TAGGGCTGGAGCAATGGGTCTGAAGCTGCATGAGGACTGGGGAACTACTCCTGCTGCAATAGATAATTGTTTGACTGTTGCAGAACAATATGACATCCAGgttattttattttatttatttatttaaacttttatgttacttgcagttgtagctagttttct-tacttt-ctgttacag--------
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GGAGGCTGGAGCAATGGGATTGAAGCTGCATGAGGACTGGGGAACTACTCCTGCTGCAATAGACAATTGTTTGGCAGTTGCAGAAGAATATGATATCCAGgtc-ttttcttttccctgatgacatcctcttttaagaaacagg-attgatagtttcccatatgtactcaattgttttgatttgacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161720992|gb|FC070359.1|FC070359EST: CTGCTGCAATAGATAATTGTTTGACTGTTGCAGAACAATATGACATCCAG GTTAATATCCACACTGACACCTTGAACGAGTCTGGCTTTGTGGAACATACA
genomic: CTGCTGCAATAGATAATTGTTTGACTGTTGCAGAACAATATGACATCCAGgttattttat ... tctgttacagGTTAATATCCACACTGACACCTTGAACGAGTCTGGCTTTGTGGAACATACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAGGGCTGGAGCAATGGGTCTGAAGCTGCATGAGGACTGGGGAACTACTCCTGCTGCAATAGATAATTGTTTGACTGTTGCAGAACAATATGACATCCAGgttattttattttatttatttatttaaacttttatgttacttgcagttgtagctagttttcttactttctgttacag
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC