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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGGAGCTGAGATCTTCAAAAGAGCTTTGACCTATCCTGCAAGACTGATTGCCAAAAATGCAGGTGTTAATGACAGTGTTGTAATAGAGAAGgtctctttatgggcatcatttgatattaaaaaatttcttggtttctgtactaattttatgacatggagtttgtttgaaacataaattcctattgggctcttgtattttttgtag

Basic information

species Vitis vinifera
transcript Vv01s0010g00920.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0010g00920.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA01G09520.1 (Glycine max), 5'ss of exon 11
ATTGGAGCTGAGATCTTCAAAAGAGCTTTGACCTATCCTGCAAGACTGATTGCCAAAAATGCAGGTGTTAATGACAGTGTTGTAATAGAGAAGgtc----tctttatgggca-----tcatttgatattaaaaaatttcttggtttct--gtact--aattttatg--acatggagtttgtttgaaacataaattcctattgggctcttgtattttttgtag------------------
||||||||||| |||||||  ||||| |||| ||||||| ||||| |||| || || ||||| ||||| |||| || |||  | ||||| ||||||    || |  || | |     |  | | |   ||| | |||  ||     ||   || |   || || ||     |  ||||  ||  |  ||| ||   |||||    |    ||  |  |  ||                  
ATTGGAGCTGAAATCTTCAGGAGAGCATTGAGCTATCCTACAAGAATGATAGCAAAGAATGCTGGTGTAAATGGCAATGTCATCATAGATAAGgtcctgatcctgttgagaaactgtttctgtaactgtaagagattgattaccaactagatatttggatcttgtgcagagtttagttaattcaactcatcaacaactattcaattaaaatacatgcttgaggccccttatttcatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349815420|gb|FQ400575.1|FQ400575
EST:     GACTGATTGCCAAAAATGCAGGTGTTAATGACGGTGTTGTAATAGAGAAG                         GTTTTATCTAATGATGATTTTCGATATGGTTATAATGCTGCAATAGACTGT
genomic: GACTGATTGCCAAAAATGCAGGTGTTAATGACAGTGTTGTAATAGAGAAGgtctctttat ... ttttttgtagGTTTTATCTAATGATGATTTTCGATATGGTTATAATGCTGCAATAGACTGT