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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCTgtgagtgctctagttcaccatctctacttttgttttttttttaacctatagtgacttactatacattgaatttgtttacttcagttttgcacaattttattttcctgaccattttcagatttctgcctctataagcatgtgctcttttgtggattcag

Basic information

species Vitis vinifera
transcript Vv00s0531g00050.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0531g00050.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA17G00910.2 (Glycine max), 5'ss of exon 12
GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCTgtgagtgctctagttcaccatctctacttttgttttttttttaacctatagtgacttactatacattgaatttgtttacttcagttttgcacaattttattttcctgaccattttcagatttctgcctctataagc-atgtgctcttttgtggattcag
|||||||||||||| ||||| ||| | |||||||||||||||||||||| |  ||| |  |  |||    || | | ||||| ||    || |  | ||  |     ||  |  || || |  || ||| |  |     |  || ||||    | |   |  ||     |  ||||   |||| ||   |     || |||
GTTGTAGCTCTTGCAAATCAGAAGCTTCTTGGTCTTGATCCTgtgagtgtttaagtgcctctgctcc---ttggctctttttgtataacat-gccattttttggctgttctagctgctt-cagcattttggttcctccattcttccctgg---tatagtggcttaataatagataatttatgtacttcctatcaaatgcag

upper sequence: Vv00s0531g00050.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA07G39870.1 (Glycine max), 5'ss of exon 12
GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCTgtgagtgctctagttcaccatctctacttttgttttttttttaacctatagtgacttactatacattgaatttgtttacttcagttttgcacaattttattttcctgaccattttcagatttctgcctctataagcatgtgctcttttgtggattcag
|||||||||||||| ||||| ||| | |||| |||| |||||||||||| |  |||  |           | || |  ||||||   || |  |  ||   |   ||||    ||| || || || | |  ||   | | | |  ||  |  ||    | |||  ||    |   | ||  |||                
GTTGTAGCTCTTGCAAATCAGAAGCTTCTTGCTCTTAATCCTgtgagtgtttaagtgaa-----------tatgctcatttttttggctgttctagctgcttcagcatt----ttggttcctccattctgccatggtat-agtggcccaataatagata-attcatgtacttcctatcaaatgcag--------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30301836|gb|CB978630.1|CB978630
EST:     GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT                         GAAAAGGTCAATGTTCATGGTGGAGCTGTATCTTTGGGACATCCAATAGGT
genomic: GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCTgtgagtgctc ... gtggattcagGAAAAGGTCAATGTTCATGGTGGAGCTGTATCTTTGGGACATCCAATAGGT
EST: gi|30301768|gb|CB978562.1|CB978562
EST:     GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT                         GAAAAGGTCAATGTTCATGGTGGAGCTGTATCTTTGGGACATCCAATAGGT
genomic: GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCTgtgagtgctc ... gtggattcagGAAAAGGTCAATGTTCATGGTGGAGCTGTATCTTTGGGACATCCAATAGGT
EST: gi|30329769|gb|CD013031.1|CD013031
EST:     GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT                         GAAAAGGTCAATGTTCATGGTGGAGCTGTATCTTTGGGACATCCAATAGGT
genomic: GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCTgtgagtgctc ... gtggattcagGAAAAGGTCAATGTTCATGGTGGAGCTGTATCTTTGGGACATCCAATAGGT
EST: gi|110414965|gb|EC980831.1|EC980831
EST:     CAAAAGTTGCTTGGTCTTGATCCT                         GAAAAGGTCAATGTTCATGGTGGAGCTGTATCTTTGGGACATCCAATAGGT
genomic: CAAAAGTTGCTTGGTCTTGATCCTgtgagtgctc ... gtggattcagGAAAAGGTCAATGTTCATGGTGGAGCTGTATCTTTGGGACATCCAATAGGT
EST: gi|34362568|gb|CF404153.1|CF404153
EST:     GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT                         GAAAAGGTCAATGTTCATGGTGGAGCTGTATCTTTGGGACATCCAATAGGT
genomic: GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCTgtgagtgctc ... gtggattcagGAAAAGGTCAATGTTCATGGTGGAGCTGTATCTTTGGGACATCCAATAGGT
EST: gi|110358833|gb|EC923335.1|EC923335
EST:     GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT                         GAAAAGGTCAATGTTCATGGTGGAGCTGTATCTTTGGGACATCCAATAGGT
genomic: GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCTgtgagtgctc ... gtggattcagGAAAAGGTCAATGTTCATGGTGGAGCTGTATCTTTGGGACATCCAATAGGT
EST: gi|34545214|gb|CF513446.1|CF513446
EST:     GTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT                         GAAAAGGTCAATGTTCATGGTGGAGCTGTATCTTTGGGACATCCAATAGGT
genomic: GTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCTgtgagtgctc ... gtggattcagGAAAAGGTCAATGTTCATGGTGGAGCTGTATCTTTGGGACATCCAATAGGT
EST: gi|110381509|gb|EC934651.1|EC934651
EST:     GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT                         GAAAAGGTCAATGTTCATGGTGGAGCTGTATCTTTGGGACATCCAATAGGT
genomic: GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCTgtgagtgctc ... gtggattcagGAAAAGGTCAATGTTCATGGTGGAGCTGTATCTTTGGGACATCCAATAGGT
EST: gi|30298600|gb|CB975394.1|CB975394
EST:     GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT                         GAAAAGGTCAATGTTCATGGTGGAGCTGTATCTTTGGGACATCCAATAGGT
genomic: GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCTgtgagtgctc ... gtggattcagGAAAAGGTCAATGTTCATGGTGGAGCTGTATCTTTGGGACATCCAATAGGT
EST: gi|110376548|gb|EC941608.1|EC941608
EST:     GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT                         GAAAAGGTCAATGTTCATGGTGGAGCTGTATCTTTGGGACATCCAATAGGT
genomic: GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCTgtgagtgctc ... gtggattcagGAAAAGGTCAATGTTCATGGTGGAGCTGTATCTTTGGGACATCCAATAGGT
EST: gi|34546208|gb|CF514440.1|CF514440
EST:     GCTCTTGCC-NTCAAAAGTTGCTTGGTCTTGATCCT                         GAAAAGGTCAATGTTCACGGTGGAGCTGTATCTTTGGGACATCCAATAGGT
genomic: GCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCTgtgagtgctc ... gtggattcagGAAAAGGTCAATGTTCATGGTGGAGCTGTATCTTTGGGACATCCAATAGGT
EST: gi|27585769|gb|CB008464.1|CB008464
EST:     GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT                         GAAAAGGTCAATGTTCATGGTGGAGCTGTATCTTTGGGACATCCAATAGGT
genomic: GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCTgtgagtgctc ... gtggattcagGAAAAGGTCAATGTTCATGGTGGAGCTGTATCTTTGGGACATCCAATAGGT
EST: gi|110378421|gb|EC943552.1|EC943552
EST:     GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT                         GAAAAGGTCAATGTTCATGGTGGAGCTGTATCTTTGGGACATCCAATAGGT
genomic: GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCTgtgagtgctc ... gtggattcagGAAAAGGTCAATGTTCATGGTGGAGCTGTATCTTTGGGACATCCAATAGGT
EST: gi|110395476|gb|EC961142.1|EC961142
EST:     GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT                         GAAAAGGTCAATGTTCATGGTGGAGCTGTATCTTTGGGACATCCAATAGGT
genomic: GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCTgtgagtgctc ... gtggattcagGAAAAGGTCAATGTTCATGGTGGAGCTGTATCTTTGGGACATCCAATAGGT
EST: gi|110361851|gb|EC925352.1|EC925352
EST:     GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCT                         GAAAAGGTCAATGTTCATGGTGGAGCTGTATCTTTGGGACATCCAATAGGT
genomic: GTTGTAGCTCTTGCCAATCAAAAGTTGCTTGGTCTTGATCCTgtgagtgctc ... gtggattcagGAAAAGGTCAATGTTCATGGTGGAGCTGTATCTTTGGGACATCCAATAGGT