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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTTCAGGGAGGCCTTCTCGCTTTGCACGTTTTGGTTTTGGCTCACAGCTTTTGCAGAAGACTGTGGGCCTAGTCTTAAAATCCCGCACAGACCGCCAGgtagcatcttgaattactgatttctattatgtttcacaccatggattctctttcctgaaatacctttatcttggttcccttatttatcatttattacattttgatactgaag

Basic information

species Vitis vinifera
transcript Vv00s0229g00030.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0229g00030.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA11G03580.1 (Glycine max), 5'ss of exon 16
AGTTTCAGGGAGGCCTTCTCGCTTTGCACGTTTTGGTTTTGGCTCACAGCTTTTGCAGAAGACTGTGGGCCTAGTCTTAAAATCCCGCACAGACCGCCAGgtagcatcttgaattactgatttctattatgtttcacaccatggattctctttcctgaaatacctttatcttggttcccttatttatcatttattacattttgatactgaag
 |  |||||| |  | ||||||||| | || ||||||||||||||||| |||||||| ||||| || || |||||||| ||| | ||| | |  || ||||||  ||    | ||  |   || | || |  |||||| ||  | ||||   |           || |  | | |    || |  |  || | |                  
GGCATCAGGGGGTACATCTCGCTTTTCCCGATTTGGTTTTGGCTCACAACTTTTGCAAAAGACAGTAGGGCTAGTCTTGAAACCTCGCTCTGGTCGACAGgtataatt---agttgttttattttctttttattcacaacagtgcttctgactgt----gcctgttcaaatggttcttgttctacactatatgtag----------------

upper sequence: Vv00s0229g00030.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA01G41800.1 (Glycine max), 5'ss of exon 13
AGTTTCAGGGAGGCCTTCTCGCTTTGCACGTTTTGGTTTTGGCTCACAGCTTTTGCAGAAGACTGTGGGCCTAGTCTTAAAATCCCGCACAGACCGCCAGgtagcatcttgaattactgatttctattatgtttcacaccatggattctctttcctgaaatacctttatcttggttcccttatttatcatttattacattttgatactgaag
 |  |||||  |  | ||||||||| | || ||||||||||||||||| |||||||| ||||| || || |||||||| ||  | ||| | |   | ||||||  ||    ||||  |   || | || |  |||||| ||  | ||||   |        |   | |  | |      ||||||||  |    || || | |         
GGCATCAGGAGGTACATCTCGCTTTTCCCGCTTTGGTTTTGGCTCACAACTTTTGCAAAAGACGGTAGGGCTAGTCTTGAAGCCTCGCTCTGGTAGACAGgtataatt---aattgttttattttctttttattcacaacagtgcttctgactgt----gcatggtcaaatgg------ttatttattctactctatatgtag---------

upper sequence: Vv00s0229g00030.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA01G41790.1 (Glycine max), 5'ss of exon 15
AGTTTCAGGGAGGCCTTCTCGCTTTGCACGTTTTGGTTTTGGCTCACAGCTTTTGCAGAAGACTGTGGGCCTAGTCTTAAAATCCCGCACAGACCGCCAGgtagcatcttgaattactgatttctattatgtttcacaccatggattctctttcctgaaatacctttatct-tggttcccttatttatcatttattacattttgatactgaag
 |  |||||  |  | ||||||||| | || ||||||||||||||||| |||||||| ||||| || || |||||||| ||| | ||| | |  || ||||||  ||  |   |   | ||||   |||| || |||| ||  | ||||  ||       | ||| | |   ||||||  |||||    | |   || || | |         
GGCATCAGGAGGTACATCTCGCTTTTCCCGCTTTGGTTTTGGCTCACAACTTTTGCAAAAGACAGTAGGGCTAGTCTTGAAACCTCGCTCTGGTCGACAGgtataat--tagttgttttattttctttatatt-cacaacagtgcttctgatt------gtgcctgtttaagtggttc--ttattc--tactctgtatatgtag---------

upper sequence: Vv00s0229g00030.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA11G03590.1 (Glycine max), 5'ss of exon 17
AGTTTCAGGGAGGCCTTCTCGCTTTGCACGTTTTGGTTTTGGCTCACAGCTTTTGCAGAAGACTGTGGGCCTAGTCTTAAAATCCCGCACAGACCGCCAGgtagcatcttgaattactgatttctattatgtttcacaccatggattctctttcctgaaatacctttatcttggttcccttatttatcatttattacattttgatactgaag
 |  |||||| |  | ||||||||| | || ||||||||||||||||| |||||||| ||||| || || |||||||| ||| | ||| | |  || ||||||  ||    | ||  |   || | || |  |||||  ||  | ||||  ||       | ||| | |    | | | |  | ||   | |||                  
-GCATCAGGGGGTACATCTCGCTTTTCCCGATTTGGTTTTGGCTCACAACTTTTGCAAAAGACCGTAGGGCTAGTCTTGAAACCTCGCTCTGGTCGACAGgtataatt---agttgttttattttctttttattcaccacagtgcttctgatt------gtgcctgtttaaatggttcttattctactctatatgtag--------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161717991|gb|FC069274.1|FC069274
EST:     TTTTGCAGAAGACTGTGGGCCTAGTCTTAAAATCCCGTACAGACCGCCAG                         GCCAAACTGGGTGAAACAAATAAATTTTATTATGACGAAAAACTTAAGAGA
genomic: TTTTGCAGAAGACTGTGGGCCTAGTCTTAAAATCCCGCACAGACCGCCAGgtagcatctt ... gatactgaagGCCAAACTGGGTGAAACAAATAAATTTTATTATGACGAAAAACTTAAGAGA
EST: gi|33405955|gb|CF211582.1|CF211582
EST:     TTTTGCAGAAGACTGTGGGCCTAGTCTTAAAATCCCGTACAGACCGCCAG                         GCCAAACTGGGTGAAACAAATAAATTTTATTATGACGAAAAACTTAAGAGA
genomic: TTTTGCAGAAGACTGTGGGCCTAGTCTTAAAATCCCGCACAGACCGCCAGgtagcatctt ... gatactgaagGCCAAACTGGGTGAAACAAATAAATTTTATTATGACGAAAAACTTAAGAGA