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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgctcatggaagattcacatctctatcatgtcattgcctgtactcccattaaataaacccatacaaactgaggaagtctttctgctcttttaa...

Basic information

species Vitis vinifera
transcript Vv00s0225g00130.t01
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30299046|gb|CB975840.1|CB975840
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|32270153|gb|CD719312.1|CD719312
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|110389517|gb|EC954364.1|EC954364
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|29785334|gb|CB342233.2|CB342233
EST:     ATCCTCATC-CACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCCCTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: ATCCTC-CCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|28960785|gb|CB340400.1|CB340400
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|71877299|gb|DT026354.1|DT026354
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|32247739|gb|CD713558.1|CD713558
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|352769572|gb|FQ468500.1|FQ468500
EST:     AATCCTCCCACACCGGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|351023682|gb|FQ448233.1|FQ448233
EST:     AATCCACCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAGGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|18458318|gb|BM436596.1|BM436596
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|294966650|gb|GW839641.1|GW839641
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAGGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|32248182|gb|CD714001.1|CD714001
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|29784204|gb|CB344645.2|CB344645
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|77581124|gb|DV219488.1|DV219488
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|27580138|gb|CB002833.1|CB002833
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|32247905|gb|CD713724.1|CD713724
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|28958445|gb|CB339217.1|CB339217
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|33409332|gb|CF214959.1|CF214959
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|27579398|gb|CB002093.1|CB002093
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|30251649|gb|CB969382.1|CB969382
EST:     CTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: CTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|110690265|gb|EE067211.1|EE067211
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|28960253|gb|CB340127.1|CB340127
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|30325827|gb|CD009089.1|CD009089
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|351037170|gb|FQ457003.1|FQ457003
EST:     AATCCACCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAGGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|33409522|gb|CF215149.1|CF215149
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATNGATCAGTCACTGAAGA-ATCGGGCACAGATAATGACTGATG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAA-GGGCACAGATAATGACTGATG
EST: gi|30322019|gb|CD005281.1|CD005281
EST:     AATCCTCCCACACGTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|28962352|gb|CB341385.1|CB341385
EST:     AATCCTCCCACCCCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|30251685|gb|CB969418.1|CB969418
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|110377606|gb|EC942684.1|EC942684
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|110361483|gb|EC924957.1|EC924957
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|110378242|gb|EC943362.1|EC943362
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|30299121|gb|CB975915.1|CB975915
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|352772700|gb|FQ472743.1|FQ472743
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|352781103|gb|FQ466416.1|FQ466416
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|18459781|gb|BM438059.1|BM438059
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|351026761|gb|FQ436414.1|FQ436414
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|110372740|gb|EC936928.1|EC936928
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|26263684|gb|CA814747.1|CA814747
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|30322520|gb|CD005782.1|CD005782
EST:     AATCCTCCCACAGGTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|110417553|gb|EC983619.1|EC983619
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|32250342|gb|CD716161.1|CD716161
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|26265676|gb|CA816739.1|CA816739
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|33409576|gb|CF215203.1|CF215203
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|27578604|gb|CB001299.1|CB001299
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|110362940|gb|EC926503.1|EC926503
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|110707090|gb|EE083187.1|EE083187
EST:     TCCTCCCACACCTGGAGAATATT-CATATCTTGCA-TTAATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAAAAAGGCACANATAATG
genomic: TCCTCCCACACCTGGAGA-TATTTCATATCT-GCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATG
EST: gi|110379655|gb|EC944867.1|EC944867
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|351025435|gb|FQ435127.1|FQ435127
EST:     AATCCACCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAGGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|110377565|gb|EC942640.1|EC942640
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|110687378|gb|EE064734.1|EE064734
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|71874055|gb|DT023110.1|DT023110
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|29784845|gb|CB341320.2|CB341320
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|32248822|gb|CD714641.1|CD714641
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|71874947|gb|DT024002.1|DT024002
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACT
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACT
EST: gi|30299262|gb|CB976056.1|CB976056
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
EST: gi|32245345|gb|CD711164.1|CD711164
EST:     AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAG                         CAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG
genomic: AATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgc ... aaacctgcagCAAAGGTATCCTTGAGTCACTGAAGAGAAGGGCACAGATAATGACTGATGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTAGGTGTCATGGTCAATCCTCCCACACCTGGAGATATTTCATATCTGCAATTTATGAGAGAGAGgtatatatgctcatggaagattcacatctctatcatgtcattgcctgtactcccattaaataaacccatacaaactgaggaagtctttctgctcttttaa

- - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggaagat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaggaag