Sequence
atgc intronic sequence ATGC exonic sequenceCTCACAGGAGATTTAAACAAGATGGTTGCACTGCAGAGGTTATTGGAGCCCTATGGGATTTGTGAGgtcagtctccagaatcttagttcttcacttcgtgttaacatttagttattttgctgagtcccattaaattttgcatattaacctctgtttatagggtaga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0220g00110.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G407044_T03 (Zea mays), 5'ss of exon 1
----------------------------------CTCACAGGAGATTTAAACAAGATGGTTGCACTGCAGAGGTTATTGGAGCCCTATGGGATTTGTGAGgtcagtctccagaatcttagttcttcacttcgtgttaacatttagttattttgctgagtcccattaaattttgcatattaacctctgtttatagggtaga
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TCTTGCATAATGGAGGGATCATTGATGATTGCAGCTTACTGGAGATCTTGACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAGgt--------aga---ttgggtcctcacatcaacttaactact--taagtgtgaaaaggcagattgggtcctcaccattg--tgttgcgcacatgacag-
upper sequence: Vv00s0220g00110.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G407044_T01 (Zea mays), 5'ss of exon 11
CTCACAGGAGATTTAAACAAGATGGTTGCACTGCAGAGGTTATTGGAGCCCTATGGGATTTGTGAGgtcagtctccagaatcttagttcttcacttcgtgttaacatttagttattttgctgagtcccattaaattttgcatattaacctctgtttatagggtaga
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CTTACTGGAGATCTTGACAAGATGGTTGCACTACAAAGGTTATTGGAGCCATATGGCATCTGTGAGgt--------aga---ttgggtcctcacatcaacttaactact--taagtgtgaaaaggcagattgggtcctcaccattg--tgttgcgcacatgacag-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352795642|gb|FQ480230.1|FQ480230EST: ACAAGATGGTTGCACTGCAAAGGTTATTGGAGCCCTATGGGATTTGTGAG GTGGCACGCACTGGGAGGGTGGCATTGGTGCGGGAGT
genomic: ACAAGATGGTTGCACTGCAGAGGTTATTGGAGCCCTATGGGATTTGTGAGgtcagtctcc ... tttcttgaagGTGGCACGCACTGGGAGGGTGGCATTGGTGCGGGAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCACAGGAGATTTAAACAAGATGGTTGCACTGCAGAGGTTATTGGAGCCCTATGGGATTTGTGAGgtcagtctccagaatcttagttcttcacttcgtgttaacatttagttattttgctgagtcccattaaattttgcatattaacctctgtttatagggtaga
- - - - - - - - - AAGATG
- - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - TTGGAG