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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAGAACATTAAAGAAGTCTGGAAAGTCCTGCAGGCTGGAAGCAATGCTAGGGCAGTTGGATCCAATAACGTGAATGAGCACAGCAGCCGATCACACTGgtattcaacttcccaaaagctttctcttttctgtttccttattcatcatattttgataagttgtgaataaaatttcaccaattttgttcag

Basic information

species Vitis vinifera
transcript Vv00s0218g00050.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0218g00050.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os03g02290.2 (Oryza sativa), 5'ss of exon 3
TGGAGAACATTAAAGAAGTCTGGAAAGTCCTGCAGGCTGGAAGCAATGCTAGGGCAGTTGGATCCAATAACGTGAATGAGCACAGCAGCCGATCACACTGgt-attcaacttcccaaaagctttctcttttctgtttccttattcatcatattttgataagttgtgaataaaatttcaccaattttgttcag
| |||||||| || || || ||| | ||| |||| |||||||||||||| ||||| || ||||| || || ||||||||||||||||| || || |||||||   ||||  |   |  |   |||| || | |  |    || |         |  | | ||| |||     || ||   |  |  |     
TTGAGAACATCAAGGAGGTTTGGGATGTCTTGCAAGCTGGAAGCAATGCAAGGGCTGTAGGATCAAACAATGTGAATGAGCACAGCAGTCGCTCCCACTGgttggtcaaaattttattattattcttttcttttctagagtacttgcttctggtcaaaatgttttgacctttatatctgtacctcag-----

upper sequence: Vv00s0218g00050.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G092232_T01 (Zea mays), 5'ss of exon 9
TGGAGAACATTAAAGAAGTCTGGAAAGTCCTGCAGGCTGGAAGCAATGCTAGGGCAGTTGGATCCAATAACGTGAATGAGCACAGCAGCCGATCACACTGgt---attcaacttcccaaaagctttctcttt--tctgtttccttatt-catcatattttgataagttgtgaataaaatttcaccaa---ttttgttcag
| |||||||| || || || ||||||||  ||||  ||||||||||||| ||||| ||||| || || || || |||||||||||||| || || |||||||   |  |   || |  | |   | || |||  |  |||  || ||| | | || |    ||   |  |   | ||  || |  |    |||| |||||
TTGAGAACATAAATGAGGTTTGGAAAGTTTTGCAAACTGGAAGCAATGCAAGGGCTGTTGGTTCAAACAATGTTAATGAGCACAGCAGTCGCTCCCACTGgttggacactgttttcatataatatccttttttattcgttggctgattgcttgatgtccaaatggttcttcttttaatctttattataacttttcttcag

upper sequence: Vv00s0218g00050.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA01G02620.1 (Glycine max), 5'ss of exon 12
TGGAGAACATTAAAGAAGTCTGGAAAGTCCTGCAGGCTGGAAGCAATGCTAGGGCAGTTGGATCCAATAACGTGAATGAGCACAGCAGCCGATCACACTGgtattcaacttcccaaaagctttctcttttctgtttccttattcatcatattttgataagttgtgaataaa------atttcaccaattttgttcag----------------------
| || ||||| || ||||| ||||| || |||||||  ||||  |||||||| |||||||||   |||||||| |||||||||||||| ||||| ||||||||   | ||     |    ||  || ||| |  | |       ||    | |  | ||  | || || ||       |||  || |   | || |                       
TTGATAACATAAATGAAGTGTGGAATGTACTGCAGGTCGGAAATAATGCTAGAGCAGTTGGAAGTAATAACGTTAATGAGCACAGCAGTCGATCTCACTGgtaccaagctcttgtattttttcttcatttatcatactaagaagatttcttgtctagaacctctgcatcaatatgctttttttcctacaatttttaacaattgcttatatctgtttcag

upper sequence: Vv00s0218g00050.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT2G22610.2 (Arabidopsis thaliana), 5'ss of exon 11
TGGAGAACATTAAAGAAGTCTGGAAAGTCCTGCAGGCTGGAAGCAATGCTAGGGCAGTTGGATCCAATAACGTGAATGAGCACAGCAGCCGATCACACTGgtattcaacttcccaaaagctttctcttttctgtttccttattcatcatattttgataagttgtgaataaaatttcaccaattttgttcag
|||| || || || ||||||||||| || || || ||||| ||||| || ||  |||||||||| ||||| ||||| ||||| |||||||| || |||||||||   |  | ||     ||||  || |  |||||   | ||   |||    | || ||   ||  ||| |||  |  ||   | | |||
TGGAAAATATAAATGAAGTCTGGAATGTGCTTCAAGCTGGGAGCAACGCAAGATCAGTTGGATCAAATAATGTGAACGAGCATAGCAGCCGCTCTCACTGgtatcatatatgcct----cttttgctgtcttgtttgaatgtttgccatcacattatgagggttgtttaatattgta--aaccct-tacag