1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GCTACTACTTCAGAATACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttatgaggtggcagaacttgttgctgaagaaagatttcataaatttttttatattattcttatattcttaagctttgataaattaatatgatgttccttcatcaatgtgtggggtacaattgattagtcaatattttttactgaaacttttaccaattttgcag
species | Vitis vinifera |
transcript | Vv00s0211g00120.t01 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|352781319|gb|FQ467765.1|FQ467765
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: AGCAAATTTTCTCT-ATTGTTTCAAAGTTTGCAGAG ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|352768597|gb|FQ467809.1|FQ467809
genomic: AGCAAGTTCTCTCTAATTG-TTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|110363542|gb|EC927137.1|EC927137
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: TGTTCAAAGTTTGCAGAG ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|33407197|gb|CF212824.1|CF212824
genomic: TGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|349827018|gb|FQ419109.1|FQ419109
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|32270628|gb|CD719787.1|CD719787
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG ACTTTGATGAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|29785535|gb|CB342622.2|CB342622
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|352780960|gb|FQ466273.1|FQ466273
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: ACAAAGCTTATCAAGAGCAAGTTCTCTTTAATTGTTCAAAGTTTGCAGAG ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|110361521|gb|EC925002.1|EC925002
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|352763948|gb|FQ465398.1|FQ465398
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|352769305|gb|FQ471454.1|FQ471454
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: TCTCTCTAATTGTTCAAAGTTTGCAGAG ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|352777762|gb|FQ466815.1|FQ466815
genomic: TCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|110379633|gb|EC944843.1|EC944843
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG ACTTTGATGAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|29784993|gb|CB341601.2|CB341601
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|27755145|gb|CB035900.1|CB035900
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|27578509|gb|CB001204.1|CB001204
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|32250249|gb|CD716068.1|CD716068
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|351030429|gb|FQ432367.1|FQ432367
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|352781813|gb|FQ469111.1|FQ469111
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|352780984|gb|FQ466297.1|FQ466297
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|30133417|gb|CB918756.1|CB918756
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|45771466|gb|CN007318.1|CN007318
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: CAAAG-TTGCAGAG AC-TTGATC-AGAAGGG-TATG-ACTTGTTTCT-GTGGAACTGAGAACCATEST: gi|110361068|gb|EC924521.1|EC924521
genomic: CAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|351016424|gb|FQ423851.1|FQ423851
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|110373188|gb|EC937406.1|EC937406
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|352777748|gb|FQ466801.1|FQ466801
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|33407112|gb|CF212739.1|CF212739
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|110363609|gb|EC927210.1|EC927210
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|110413717|gb|EC979522.1|EC979522
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG ACATTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|352781311|gb|FQ467757.1|FQ467757
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: GCAAGTTTTCTCTAATTTTTCAAAGTTTGCAGAG ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|351029249|gb|FQ435449.1|FQ435449
genomic: GCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|32246995|gb|CD712814.1|CD712814
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG ACTNTGATGAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|29785493|gb|CB342547.2|CB342547
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|352773661|gb|FQ472443.1|FQ472443
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCATAG ACTTTGATCAAGAAGGGTTATGAATTTGTTTCTGGTGGAACTGAGAACCATEST: gi|352772663|gb|FQ472138.1|FQ472138
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: CAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|351053957|gb|FQ441723.1|FQ441723
genomic: CAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|352772602|gb|FQ472077.1|FQ472077
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: TGTTCAAAAGTTTGCAGAG ACTTTGATCAAGAAGGGTTATGAACTTGTTTTTGGTGGAACTGAGAACCATEST: gi|29785469|gb|CB342488.2|CB342488
genomic: TGTTC-AAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|30299931|gb|CB976725.1|CB976725
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG ACTTTGATGAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCATEST: gi|351013925|gb|FQ434077.1|FQ434077
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
EST: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAG ACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
genomic: ACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttat ... aattttgcagACTTTGATCAAGAAGGGTTATGAACTTGTTTCTGGTGGAACTGAGAACCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTACTACTTCAGAATACAAAGCTTATCAAGAGCAAGTTCTCTCTAATTGTTCAAAGTTTGCAGAGgtatggttatgaggtggcagaacttgttgctgaagaaagatttcataaatttttttatattattcttatattcttaagctttgataaattaatatgatgttccttcatcaatgtgtggggtacaattgattagtcaatattttttactgaaacttttaccaattttgcag
- - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - AGCAAG