1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CACAAGTATGCTAATGAGGATGTTTCATTGGGATCTTGGTTTATTGGTTTGGACGCAGAGCATATTGATGACCGGCGACTGTGTTGCGGTACCCCACCAGgtaatgttataacagactagtttatagtctctgtagagctatgaatcctggttttagcccctctttagttgttgtggtgttggttaaaattaccaatcag...
species | Vitis vinifera |
transcript | Vv19s0090g00560.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GGACGCAGAGCATATTGATGACCGGCGACTGTGTTGCGGTACCCCACCAG ATTGTGAGTGGAAAGCTCAGGCAGGCAACATCTGTGTTGCTTCATTTGACTEST: gi|349826233|gb|FQ416038.1|FQ416038
genomic: GGACGCAGAGCATATTGATGACCGGCGACTGTGTTGCGGTACCCCACCAGgtaatgttat ... tttaccgcagATTGTGAGTGGAAAGCTCAGGCAGGCAACATCTGTGTTGCTTCATTTGACT
EST: GGACGCAGAGCATATTGATGACCGGCGACTGTGTTGCGGTACCCCACCAG ATTGTGAGTGGAAAGCTCAGGCAGGCAACATCTGTGTTGCTTCATTTGACTEST: gi|71875910|gb|DT024965.1|DT024965
genomic: GGACGCAGAGCATATTGATGACCGGCGACTGTGTTGCGGTACCCCACCAGgtaatgttat ... tttaccgcagATTGTGAGTGGAAAGCTCAGGCAGGCAACATCTGTGTTGCTTCATTTGACT
EST: GGACGCAGAGCATATTGATGACCGGCGACTGTGTTGCGGTACCCCACCAG ATTGTGAGTGGAAAGCTCAGGCAGGCAACATCTGTGTTGCTTCATTTGACTEST: gi|77583730|gb|DV220900.1|DV220900
genomic: GGACGCAGAGCATATTGATGACCGGCGACTGTGTTGCGGTACCCCACCAGgtaatgttat ... tttaccgcagATTGTGAGTGGAAAGCTCAGGCAGGCAACATCTGTGTTGCTTCATTTGACT
EST: GGACGCAGAGCATATTGATGACCGGCGACTGTGTTGCGGTACCCCACCAG ATTGTGAGTGGAAAGCTCAGGCAGGCAACATCTGTGTTGCTTCATTTGACTEST: gi|34544220|gb|CF512452.1|CF512452
genomic: GGACGCAGAGCATATTGATGACCGGCGACTGTGTTGCGGTACCCCACCAGgtaatgttat ... tttaccgcagATTGTGAGTGGAAAGCTCAGGCAGGCAACATCTGTGTTGCTTCATTTGACT
EST: GGACGCAGAGCATATTGATGACCGGCGACTGTGTTGCGGTACCCCACCAG ATTGTGAGTGGAAAGCTCAGGCAGGCAACATCTGTGTTGCTTCATTTGACTEST: gi|71875911|gb|DT024966.1|DT024966
genomic: GGACGCAGAGCATATTGATGACCGGCGACTGTGTTGCGGTACCCCACCAGgtaatgttat ... tttaccgcagATTGTGAGTGGAAAGCTCAGGCAGGCAACATCTGTGTTGCTTCATTTGACT
EST: GGACGCAGAGCATATTGATGACCGGCGACTGTGTTGCGGTACCCCACCAG ATTGTGAGTGGAAAGCTCAGGCAGGCAACATCTGTGTTGCTTCATTTGACTEST: gi|110385919|gb|EC950479.1|EC950479
genomic: GGACGCAGAGCATATTGATGACCGGCGACTGTGTTGCGGTACCCCACCAGgtaatgttat ... tttaccgcagATTGTGAGTGGAAAGCTCAGGCAGGCAACATCTGTGTTGCTTCATTTGACT
EST: GGACGCAGAGCATATTGATGACCGGCGACTGTGTTGCGGTACCCCACCAG ATTGTGAGTGGAAAGCTCAGGCAGGCAACATCTGTGTTGCTTCATTTGACTEST: gi|351046999|gb|FQ454609.1|FQ454609
genomic: GGACGCAGAGCATATTGATGACCGGCGACTGTGTTGCGGTACCCCACCAGgtaatgttat ... tttaccgcagATTGTGAGTGGAAAGCTCAGGCAGGCAACATCTGTGTTGCTTCATTTGACT
EST: GGACGCAGAGCATATTGATGACCGGCGACTGTGTTGCGGTACCCCACCAG ATTGTGAGTGGAAAGCTCAGGCAGGCAACATCTGTGTTGCTTCATTTGACTEST: gi|110712361|gb|EE089898.1|EE089898
genomic: GGACGCAGAGCATATTGATGACCGGCGACTGTGTTGCGGTACCCCACCAGgtaatgttat ... tttaccgcagATTGTGAGTGGAAAGCTCAGGCAGGCAACATCTGTGTTGCTTCATTTGACT
EST: GGACGCAGAGCATATTGATGACCGGCGACTGTGTTGCGGTACCCCACCAG ATTGTGAGTGGAAAGCTCAGGCAGGCAACATCTGTGTTGCTTCATTTGACTEST: gi|351056608|gb|FQ442436.1|FQ442436
genomic: GGACGCAGAGCATATTGATGACCGGCGACTGTGTTGCGGTACCCCACCAGgtaatgttat ... tttaccgcagATTGTGAGTGGAAAGCTCAGGCAGGCAACATCTGTGTTGCTTCATTTGACT
EST: GGACGCAGAGCATATTGATGACCGGCGACTGTGTTGCGGTACCCCACCAG ATTGTGAGTGGAAAGCTCAGGCAGGCAACATCTGTGTTGCTTCATTTGACT
genomic: GGACGCAGAGCATATTGATGACCGGCGACTGTGTTGCGGTACCCCACCAGgtaatgttat ... tttaccgcagATTGTGAGTGGAAAGCTCAGGCAGGCAACATCTGTGTTGCTTCATTTGACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACAAGTATGCTAATGAGGATGTTTCATTGGGATCTTGGTTTATTGGTTTGGACGCAGAGCATATTGATGACCGGCGACTGTGTTGCGGTACCCCACCAGgtaatgttataacagactagtttatagtctctgtagagctatgaatcctggttttagcccctctttagttgttgtggtgttggttaaaattaccaatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaatta