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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTTGAACATGGCCTAGGTCATCTTCCATTCACAGAAAAGCAGGTGATCACTCCAACTGgtaagctgatattactcaatgaccacctgattgtacaactcttgctgtttgtgttggcattttcattggtagtgccaagttagatgggccatttgctctc...

Basic information

species Vitis vinifera
transcript Vv19s0015g01730.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os02g17320.3 (Oryza sativa), 5'ss of exon 10
GTTGTTGAACATGGCCTAGGTCATCTTCCATTCACAGAAAAGCAGGTGATCACTCCAACTGgtaagctgatattactcaatgaccacctgattgtacaactcttgctgttt--gtgttg-gcattttcattggtagtgccaag--ttagatgggccatttgctctc
|||||||| ||||| || ||||||||||||||||  ||||||||||| || ||||||||||||| | |  |||| | |  ||||||   | ||||    ||  | |||||   |||||    ||| ||  |   | |||  ||  |       ||   | | |   
GTTGTTGAGCATGGTCTTGGTCATCTTCCATTCAAGGAAAAGCAGGTCATAACTCCAACTGgtagg-tagtattgcactgtgaccattcg-ttgtcttccttgtactgttctggtgttacaaattatctcttcaaatgcagagaatcttgctcgctgctagtt---

upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os11g16370.1 (Oryza sativa), 5'ss of exon 10
GTTGTTGAACATGGCCTAGGTCATCTTCCATTCACAGAAAAGCAGGTGATCACTCCAACTGgtaagctgatattactcaatgaccacctgattgtacaactcttgctgttt--gtgttggcattttcattggtagtgccaagttagatgggccatttgctctc
||||| || ||||| || ||||||||||||||||  ||||| ||||| || ||||||||||||||| |  |||| | || |  |||       ||    ||     ||||   |||||   | ||   ||  |   |   |  | | | | | | | | |   
GTTGTCGAGCATGGTCTTGGTCATCTTCCATTCAAGGAAAAACAGGTCATAACTCCAACTGgtaag-tagtattgcacagtcgccattcacgcgtgttccttgcattgttcaggtgttacaaattatcttaatgcagaggatcttgctcg-ctactagtttgt

upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G169462_T01 (Zea mays), 5'ss of exon 9
GTTGTTGAACATGGCCTAGGTCATCTTCCATTCACAGAAAAGCAGGTGATCACTCCAACTGgtaagctgatat--tactcaatgaccacctgattgtacaactcttgctgtttgtgttggcattttcattggtagtgccaagtta-gatgggccatttgctctc
||||| |||||||| || ||||||||||| |||   ||||||||||| |||||||| |||||||||| | |    || |  ||     |||| ||        | |     || | |   ||  |  | ||  ||| |    | | |||     | |       
GTTGTCGAACATGGTCTTGGTCATCTTCCTTTCCAGGAAAAGCAGGTCATCACTCCGACTGgtaagcaggtcctctattatatagttccctgttttcttcgtgcatataagttttctcttcaaatgaaatgcgagtacatgttcaagataatgtagtaaaa---

upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G034143_T03 (Zea mays), 5'ss of exon 11
GTTGTTGAACATGGCCTAGGTCATCTTCCATTCACAGAAAAGCAGGTGATCACTCCAACTGgtaagctgatattactcaat-gaccacctgattgtacaactcttgctgtttgtgttggcattttcattggtagtgccaagtta-gatgggccatttgctctc
||||| |||||||| || ||||||||||| ||    ||||||||||| |||||||| |||||||||| | |  |    | | |    |||| ||        | |     || | |    |  |  | ||  ||| |    | | |||        |      
GTTGTGGAACATGGTCTTGGTCATCTTCCTTTTCAGGAAAAGCAGGTCATCACTCCGACTGgtaagcaggtcctctgtatttggttccctgttttcttcgtgcatataagttttctcttaaaatgaaatgagagtacatgttcatgataatgtggctaaat--

upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA02G47270.1 (Glycine max), 5'ss of exon 10
GTTGTTGAACATGGCCTAGGTCATCTTCCATTCACAGAAAAGCAGGTGATCACTCCAACTGgtaagctgatattactcaatgaccacct-----gattgtacaactcttgctgtttgtgttggcattttcattggtagtgccaagttagatgggccatttgctctc
||||| |||||||||||||| ||||||||||| ||||||||||| || | ||||||||||||||||||| | ||  |||||||     |     | |||||  ||   | |   |   | ||  || |||  |  |  |  ||   ||||  |     | | |   
GTTGTAGAACATGGCCTAGGGCATCTTCCATTTACAGAAAAGCAAGTAACCACTCCAACTGgtaagctgttctttttcaatgatggtttccttggcttgtattacatgtacctctaaggatgcaatattctcttctcattgca--ctagaaagtgttgtggat---

upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA08G45270.1 (Glycine max), 5'ss of exon 10
GTTGTTGAACATGGCCTAGGTCATCTTCCATTCACAGAAAAGCAGGTGATCACTCCAACTGgtaagctgat---attactcaatgaccacctgattgtacaactcttgctgtttgtgttggcattttcattggtagtgcc--aagttagatgggccatttgctctc
||||| ||||||||  | || ||||| ||||| ||||||||||| || |||||||| ||||||||  |  |   ||   |   |    |  | |||||      || | | | |||| |    ||| | ||  |  | |    || || | |    |  ||     
GTTGTGGAACATGGTTTGGGGCATCTGCCATTTACAGAAAAGCAAGTAATCACTCCCACTGgtaacatttttcaatacttttcttgtaagattattgtgatgtactagttttatgtgctattttttacgtttttgatccttgcagctaaaggatttagctg-----

upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT1G55810.1 (Arabidopsis thaliana), 5'ss of exon 10
GTTGTTGAACATGGCCTAGGTCATCTTCCATTCACAGAAAAGCAGGTGATCACTCCAACTGgtaagctgatattactcaatgaccacctgattgtacaactcttgctgtttgtgttggcattttcattggtagtgccaagtta-gatgggccatttgctctc-----------
|| |||||||||||||| || || ||||| || ||||||||||| ||| | |||||||| |||||||| ||   |    | ||  |     |  ||||| |||||  |      |   || |   | |  || |   || | | | || |   || | | ||           
GTCGTTGAACATGGCCTCGGACACCTTCCCTTTACAGAAAAGCAAGTGGTTACTCCAACAGgtaagctaatgaaa----aagattataccttactacaa-tcttggagaagaactctccaatcatagtaatattataaactcatgttgagtttttggatttctgtaattgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349818455|gb|FQ401069.1|FQ401069
EST:     TGGCCTAGGTCATCTTCCATTCACAGAAAAGCAGGTGATCACTCCAACTG                         AGTCTGTATATTCTGGCGTGGATTTCTGCAAGAGATTATGCGGTGTCTCTG
genomic: TGGCCTAGGTCATCTTCCATTCACAGAAAAGCAGGTGATCACTCCAACTGgtaagctgat ... gttaatacagAGTCTGTATATTCTGGCGTGGATTTCTGCAAGAGATTATGCGGTGTCTCTG
EST: gi|349825804|gb|FQ423099.1|FQ423099
EST:     TGGCCTAGGTCATCTTCCATTCACAGAAAAGCAGGTGATCACTCCAACTG                         AGTCTGTATATTCTGGCGTGGATTTCTGCAAGAGATTATGCGGTGTCTCTG
genomic: TGGCCTAGGTCATCTTCCATTCACAGAAAAGCAGGTGATCACTCCAACTGgtaagctgat ... gttaatacagAGTCTGTATATTCTGGCGTGGATTTCTGCAAGAGATTATGCGGTGTCTCTG
EST: gi|349832612|gb|FQ421970.1|FQ421970
EST:     TGGCCTAGGTCATCTTCCATTCACAGAAAAGCAGGTGATCACTCCAACTG                         AGTCTGTATATTCTGGCGTGGATTTCTGCAAGAGATTATGCGGTGTCTCTG
genomic: TGGCCTAGGTCATCTTCCATTCACAGAAAAGCAGGTGATCACTCCAACTGgtaagctgat ... gttaatacagAGTCTGTATATTCTGGCGTGGATTTCTGCAAGAGATTATGCGGTGTCTCTG
EST: gi|349808312|gb|FQ405456.1|FQ405456
EST:     TGGCCTAGGTCATCTTCCATTCACAGAAAAGCAGGTGATCACTCCAACTG                         AGTCTGTATATTCTGGCGTGGATTTCTGCAAGAGATTATGCGGTGTCTCTG
genomic: TGGCCTAGGTCATCTTCCATTCACAGAAAAGCAGGTGATCACTCCAACTGgtaagctgat ... gttaatacagAGTCTGTATATTCTGGCGTGGATTTCTGCAAGAGATTATGCGGTGTCTCTG
EST: gi|349824583|gb|FQ413250.1|FQ413250
EST:     TGGCCTAGGTCATCTTCCATTCACAGAAAAGCAGGTGATCACTCCAACTG                         AGTCTGTATGTTCTGGCGTGGATTTCTGCAAGAGATTATGCGGTGTCTCTG
genomic: TGGCCTAGGTCATCTTCCATTCACAGAAAAGCAGGTGATCACTCCAACTGgtaagctgat ... gttaatacagAGTCTGTATATTCTGGCGTGGATTTCTGCAAGAGATTATGCGGTGTCTCTG
EST: gi|349809963|gb|FQ398588.1|FQ398588
EST:     TGGCCTAGGTCATCTTCCATTCACAGAAAAGCAGGTGATCACTCCAACTG                         AGTCTGTATATTCTGGCGTGGATTTCTGCAAGAGATTATGCGGTGTCTCTG
genomic: TGGCCTAGGTCATCTTCCATTCACAGAAAAGCAGGTGATCACTCCAACTGgtaagctgat ... gttaatacagAGTCTGTATATTCTGGCGTGGATTTCTGCAAGAGATTATGCGGTGTCTCTG