Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTGGGTGGATAATGGGCTGCCCCATGGACTTAAATTTTCAACTTTTTGAGACAGCAACACTTTTTATAACTGTTTTGGTTGTGGCCTTCTTGCTTCAGgtttgtattcaatgaaggaacacagatctatatactttgatagtggtgtcttgtagatattcatcattatttctctgtttggttatttcacaataacttacatattcctcttgttttgtttgcag

Basic information

species Vitis vinifera
transcript Vv19s0015g01320.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0015g01320.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA18G08030.1 (Glycine max), 5'ss of exon 11
TATTGGGTGGATAATGGGCTGCCCCATGGACTTAAATTTTCAACTTTTTGAGACAGCAACACTTTTTATAACTGTTTTGGTTGTGGCCTTCTTGCTTCAGgtttgtattcaat-----gaaggaacacagatctatatactttgatagtggtgtcttg-------tagatatt---catcattatttctctgtttggttatttcacaataactta----catattcctcttgttttg--tttgcag
|||||| |||||||| ||    || ||||||||||| ||||||||||||||||| ||| |||| ||| | |||||| | || || |||||| || | ||||||||||||||||      ||  |  | | |  |  | | | || || | |   | |        ||||||       | |  | | |  || ||  |  | | | || ||  ||      |       || || ||  |||||||
TATTGGCTGGATAATAGGGCAACCTATGGACTTAAACTTTCAACTTTTTGAGACTGCAGCACTATTTCTTACTGTTATAGTCGTAGCCTTCATGTTACAGgtttgtattcaatcataaaaaaaagaataaaaattaaaagtatggtattaggaacctaaaacacatagatagcacatgttaacaatgccttgattattagtatgataaaaagataacattgtgacatatttattatgaatttgcag

upper sequence: Vv19s0015g01320.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA08G44910.1 (Glycine max), 5'ss of exon 9
TATTGGGTGGATAATGGGCTGCCCCATGGACTTAAATTTTCAACTTTTTGAGACAGCAACACTTTTTATAACTGTTTTGGTTGTGGCCTTCTTGCTTCAGgtttgtattcaatgaaggaacacagatctatatactttgatagtggtgtcttgtagatattcatcattatttctctgtt----tggttatttcacaataacttacatattcctcttgttttg--tttgcag
|||||| |||||||  ||   ||| ||||||||||| ||||||||||||||||| |||  ||| ||| | |||||| | ||||| |||||| || | |||||||||||||||  |   || | |||   ||  |  || | |||   || ||    || || |  || | ||   | ||    |||| |   |  || |    |||  |  |  || || ||  |||||||
TATTGGCTGGATAACAGGGCACCCTATGGACTTAAACTTTCAACTTTTTGAGACTGCAGTACTATTTCTTACTGTTATAGTTGTCGCCTTCATGTTACAGgtttgtattcaaacataaaaaaaaga---atgaaaattaaaagtatggtattacgaatgttaacaatgacttgattattagtatggtgaagactgaagagacaacac-tgacatttattatgcatttgcag

upper sequence: Vv19s0015g01320.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA08G44920.1 (Glycine max), 5'ss of exon 9
TATTGGGTGGATAATGGGCTGCCCCATGGACTTAAATTTTCAACTTTTTGAGACAGCAACACTTTTTATAACTGTTTTGGTTGTGGCCTTCTTGCTTCAGgtttgtattcaatga-aggaacacagatctatatactttgatagtggtgtcttgtagatattcatcattatttctctgtttggttatttcacaataacttacatattcctcttgttttgtttgcag
|||||| ||||| |||||    || ||||||||||| ||||| ||||||||||| ||| |||| ||| | |||||| | || || ||| || || | ||||||||||||||| || |  |  |   |  |  | | | || || | |   |    | | ||  |  |  ||  |     ||     | | ||| ||| |||  ||| | | |||            
TATTGGTTGGATGATGGGGCAACCTATGGACTTAAACTTTCACCTTTTTGAGACTGCAGCACTATTTCTCACTGTTATAGTCGTAGCCATCATGTTACAGgtttgtattcaaagataaaagaatgaaaatgaaaattatgctattaggaaccca-aaacatgtag-acaatgacatatgttaacattgtgacattaatttat-tatgcat-ttgcag---------