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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGGAACGGATATTGAAGATTTTAAGTGCTCTTGGTTGGTTGTGAAAGCACTAGAGATTTGTAATGAGGAACAGAAAAAAACCTTATATgtaagctaggaactcatcctccccctattctgcttctttcattattatcatttacaatatttacttaataatacgagttctgttaccactctaccag

Basic information

species Vitis vinifera
transcript Vv19s0015g01010.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0015g01010.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA15G12780.1 (Glycine max), 5'ss of exon 10
ATCGGAACGGATATTGAAGATTTTAAGTGCTCTTGGTTGGTTGTGAAAGCACTAGAGATTTGTAATGAGGAACAGAAAAAAACCTTATATgtaagctaggaactcatcctccccctattctgcttctttcattattatcatttacaatatttacttaataatacgagttctgttaccactctaccag------
|| || || |||||||||||||| |||||||||||||| |||||||||||  | ||  || |||||||  |||| || |||    || | |||||  || | || ||  |  |||      | ||||||| |||||  |    |  ||        |||||  |   || | ||     | |           
ATAGGTACAGATATTGAAGATTTCAAGTGCTCTTGGTTAGTTGTGAAAGCCTTGGAACTTAGTAATGAACAACAAAAGAAAGTTCTACACgtaagtgagcatcttattgtttccc------gtttctttccttattgcctgccatgattagactgcaataaatcacttttttttttttttttgtggtttgcag

upper sequence: Vv19s0015g01010.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA09G01820.3 (Glycine max), 5'ss of exon 10
ATCGGAACGGATATTGAAGATTTTAAGTGCTCTTGGTTGGTTGTGAAAGCACTAGAGATTTGTAATGAGGAACAGAAAAAAACCTTATATgtaagctaggaactcatcctccccctattctgcttctttcattattatcatttacaatatttacttaataatacgagttctgttaccactctaccag
|| || || |||||||||||||| ||||||||||||||  ||||||||||  | ||  || |||||||  |||| || |||    || | |||||  || | || ||  |  |||      | ||||||| ||||| ||    |  ||        |||||  |    | | ||     | | |   
ATAGGTACAGATATTGAAGATTTCAAGTGCTCTTGGTTAATTGTGAAAGCCTTGGAACTTAGTAATGAACAACAAAAGAAAGTTCTACAAgtaagtgagcatcttattatttccc------gtttctttccttattgtctgccatgattagactgcaataagtcactgtttttttgtggtttgcag-

upper sequence: Vv19s0015g01010.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA09G01820.2 (Glycine max), 5'ss of exon 10
ATCGGAACGGATATTGAAGATTTTAAGTGCTCTTGGTTGGTTGTGAAAGCACTAGAGATTTGTAATGAGGAACAGAAAAAAACCTTATATgtaagctaggaactcatcctccccctattctgcttctttcattattatcatttacaatatttacttaataatacgagttctgttaccactctaccag
    | || |||||||||||||| ||||||||||||||  ||||||||||  | ||  || |||||||  |||| || |||    || | |||||  || | || ||  |  |||      | ||||||| ||||| ||    |  ||        |||||  |    | | ||     | | |   
----GTACAGATATTGAAGATTTCAAGTGCTCTTGGTTAATTGTGAAAGCCTTGGAACTTAGTAATGAACAACAAAAGAAAGTTCTACAAgtaagtgagcatcttattatttccc------gtttctttccttattgtctgccatgattagactgcaataagtcactgtttttttgtggtttgcag-

upper sequence: Vv19s0015g01010.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA04G34770.1 (Glycine max), 5'ss of exon 3
ATCGGAACGGATATTGAAGATTTTAAGTGCTCTTGGTTGGTTGTGAAAGCACTAGAGATTTGTAATGAGGAACAGAAAAAAACCTTATATgtaagctaggaactcatcctccccctattctgcttctttcattattatcatttacaatatttacttaataatacgagttctgttaccactctaccag
|| || || |||||||||||||| |||||||| |||||  ||||||||||  | ||  || |||||||  |||| || |||    || | |||||  || | || ||  |  |||      | ||||||| ||||| ||    |  ||        |||||  |    | | ||     | | |   
ATAGGTACAGATATTGAAGATTTCAAGTGCTCGTGGTTAATTGTGAAAGCCGTGGAACTTAGTAATGAACAACAAAAGAAAGTTCTACAAgtaagtgagcatcttattatttccc------gtttctttccttattgtctgccatgattagactgcaataagtcactatttttttgtggtttgcag-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110396453|gb|EC962139.1|EC962139
EST:     TTGTGAAAGCACTAGAGATTTGTAATGAGGAACAGAAAAAAGCCTTATAT                         GGAAACTATGGGAAAGCAGATCCAGCCAATGTTGCAAAAGTGAAGGCACTT
genomic: TTGTGAAAGCACTAGAGATTTGTAATGAGGAACAGAAAAAAACCTTATATgtaagctagg ... actctaccagGGAAACTATGGGAAAGCAGATCCAGCCAATGTTGCAAAAGTGAAGGCACTT
EST: gi|22013972|gb|BQ799006.1|BQ799006
EST:     TTGTGAAAACACTAGAGATTTGTAATGAGGAACAGNNNNNNNCCTTATAT                         GGAAACTATGGGAAAGCAGATCCAGCCAATGTTGCAAAAGTGAAGGCACTT
genomic: TTGTGAAAGCACTAGAGATTTGTAATGAGGAACAGAAAAAAACCTTATATgtaagctagg ... actctaccagGGAAACTATGGGAAAGCAGATCCAGCCAATGTTGCAAAAGTGAAGGCACTT
EST: gi|110375001|gb|EC939952.1|EC939952
EST:     TTGTGAAAACACTAGAGATTTGTAATGAGGAACAGNNNNNNNCCTTATAT                         GGAAACTATGGGAAAGCAGATCCAGCCAATGTTTGCAAA
genomic: TTGTGAAAGCACTAGAGATTTGTAATGAGGAACAGAAAAAAACCTTATATgtaagctagg ... actctaccagGGAAACTATGGGAAAGCAGATCCAGCCAATGTT-GCAAA