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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTCCAGCGGTTAGCAAATGACAAATTCTGCAACAAAAATCGCTGCATTGTTATCACAgtaagcacatactttgttcaaccctccgtaaagatcaattttttgacaatgtttttttgtcag

Basic information

species Vitis vinifera
transcript Vv19s0015g00280.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0015g00280.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G129913_T04 (Zea mays), 5'ss of exon 10
TGTTCCAGCGGTTAGCAAATGACAAATTCTGCAACAAAAATCGCTGCATTGTTATCACAgtaagca-catactttgttcaac--------cctccgtaaagatcaattt--tttgacaatgtttttttgtcag-----
|||||||||| || || |||||||| |||||  | | |||||||||||||||||| |||||||| | ||    |    | |           | | |||   |   | |  ||| |  || ||   ||||||      
TGTTCCAGCGTTTGGCCAATGACAAGTTCTGTGAAAGAAATCGCTGCATTGTTATTACAgtaagtaacaactctcacccgatgttatcaattttcataattttttctctagtttcatgatattgcattgtcaacccag

upper sequence: Vv19s0015g00280.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G129913_T05 (Zea mays), 5'ss of exon 9
TGTTCCAGCGGTTAGCAAATGACAAATTCTGCAACAAAAATCGCTGCATTGTTATCACAgtaagca--------catactttgtt-caaccctccgtaaagatcaattt--tttgacaatgtttttttgtcag--------------------------
|||||||||| || || |||||||| |||||  | | |||||||||||||||||| |||||||| |        ||  |  ||||   |   | | |||   |   | |  ||| |  || ||   ||||||                           
TGTTCCAGCGTTTGGCCAATGACAAGTTCTGTGAAAGAAATCGCTGCATTGTTATTACAgtaagtaacaactctcacccgatgttatcaattttcataattttttctctagtttcatgatattgcattgtcaacccagggaagaggctatccagatatt

upper sequence: Vv19s0015g00280.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G129913_T02 (Zea mays), 5'ss of exon 9
-----------------------------------------TGTTCCAGCGGTTAGCAAATGACAAATTCTGCAACAAAAATCGCTGCATTGTTATCACAgtaagca-catactttgttcaac--------cctccgtaaagatcaattt--tttgacaatgtttttttgtcag-----
                                         |||||||||| || || |||||||| |||||  | | |||||||||||||||||| |||||||| | ||    |    | |           | | |||   |   | |  ||| |  || ||   ||||||      
TTCCGCTCTTTGTACAATATGCTTCAGTAGTCCCTTTGCAGTGTTCCAGCGTTTGGCCAATGACAAGTTCTGTGAAAGAAATCGCTGCATTGTTATTACAgtaagtaacaactctcacccgatgttatcaattttcataattttttctctagtttcatgatattgcattgtcaacccag

upper sequence: Vv19s0015g00280.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT3G13170.1 (Arabidopsis thaliana), 5'ss of exon 10
TGTTCCAGCGGTTAGCAAATGACAAATTCTGCAACAAAAATCGCTGCATTGTTATCACAgtaagca-catactttgttca----accctccgtaaagatcaatttt--ttgacaatgtttttttgtcag------------------------
| |||||||| |||||||||||||  || ||||| |  || ||||||||||||||||||||||| |   | |||  |||         || ||   ||  | ||||  ||  || | | | |||| ||                         
TATTCCAGCGTTTAGCAAATGACATGTTTTGCAAGACGAACCGCTGCATTGTTATCACAgtaagaaatctgcttcattcttactgatttcagttttgactagttttcatttccattttatgtttgacatcaaagttacgattgtttttggcag