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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTCTAGAGTAGTTAAGCTCGCTGATGGGGAGAGGTCATACCACATCTTTTATCAACTTTGTGCTGGTGCTCCATCCATTCTCAAAGgttgtaatttcattgtttttccatcctgctaattttttgtgccttgtgtgcttgtgtttgtttctatgcaactattgtgttgttgacaaatgtgaacatg...

Basic information

species Vitis vinifera
transcript Vv19s0014g03640.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g03640.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA13G35790.1 (Glycine max), 5'ss of exon 11
CAGTCTAGAGTAGTTAAGCTCGCTGATGGGGAGAGGTCATACCACATCTTTTATCAACTTTGTGCTGGTGCTCCATCCATTCTCAAAGgttgtaatttcattgtttttccatcctgctaattttttgtgc-cttgtgtgcttgtgtttgtttcta----tgcaactattgtgttgttgacaaat--gtgaacatg
   |||||||| ||| | || ||    || ||||||||||| ||||| ||||||||||||||||||||  || ||||   ||| |||||| | | ||||     |   | |||   ||| |  ||||    ||||  | |||  ||   | | |        ||  ||| | ||   || || |  || || || 
---TCTAGAGTTGTTCAACTTGCATTGGGTGAGAGGTCATATCACATATTTTATCAACTTTGTGCTGGATCTTCATCTGATCTTAAAGgt-gcattttc-----tacacaatctatctattagtttgcatacttgcatacttccgtgcatctttgaaatcaaaatgattatttttgagataattccgttaaaat-

upper sequence: Vv19s0014g03640.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA12G34780.1 (Glycine max), 5'ss of exon 12
CAGTCTAGAGTAGTTAAGCTCGCTGATGGGGAGAGGTCATACCACATCTTTTATCAACTTTGTGCTGGTGCTCCATCCATTCTCAAAGgttgtaatttcattgtttttccatcctgctaattt-tttgtgc-cttgtgtgcttgtgtttgtttctatgcaactattg--tgttgttgaca-aatgtgaacatg--
   || ||||| ||| | || ||    |  ||||||||||| ||||| ||||||||||||||||||||  || ||||   ||| ||||||        |||| | |   ||  ||   ||||  ||||    ||||  ||||| |||   | | |  |     | ||    || |||| | |||   |       
---TCAAGAGTTGTTCAACTTGCCTTGGACGAGAGGTCATATCACATATTTTATCAACTTTGTGCTGGATCTTCATCTGATCTTAAAGgtg-------cattttctacgcagtctatcaattagtttgcatacttgaatgcttctgtgcatctttgagatcaaaatgaccatttttgatataattccattgaaat

upper sequence: Vv19s0014g03640.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA12G22300.1 (Glycine max), 5'ss of exon 10
CAGTCTAGAGTAGTTAAGCTCGCTGATGGGGAGAGGTCATACCACATCTTTTATCAACTTTGTGCTGGTGCTCCATCCATTCTCAAAGgttgtaatttcattgtttttccatcctgctaattttttgtgccttgtgtgcttgtgtttgtttctatgcaactattgtgttgttgacaaatgtgaacatg-
   |||||||| ||| | || ||  |||| ||||| ||||| ||||| ||||||||||||||||||||  || | ||   ||| ||||||  || ||||   | | |    |  |    ||   |   | ||| | |    ||  || ||| ||||  |   |||| || |    |  ||| |   |  
---TCTAGAGTTGTTCAACTGGCCAATGGTGAGAGATCATATCACATATTTTATCAACTTTGTGCTGGATCTTCTTCTGATCTTAAAGgt-atattttctaagctatcaacttgtttgtatacatgtagacttttatatcagtcattttttttatggcatatttgttttctatgtatgtgttagtgttg