Sequence
atgc intronic sequence ATGC exonic sequenceTTTCGGGTATGGAATTATGCTTCTGGAGCTAATCACTGGGCAGAGAGCTTTTGATCTTGCTCGGCTTGCCAATGATGATGATGTCATGTTGCTTGATTGGgtaagcattactgtctttttccaccctatactgattagaccacttactgccccctttgccagtattttttaagctaacaggataaatgccatctttctta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0164g00070.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os04g38480.1 (Oryza sativa), 5'ss of exon 10
TTTCGGGTATGGAATTATGCTTCTGGAGCTAATCACTGGGCAGAGAGCTTTTGATCTTGCTCGGCTTGCCAATGATGATGATGTCATGTTGCTTGATTGGgtaagcattactgtctttttccaccctatactgattagaccacttactgccccctttgccagtattttttaagctaacaggataaatgccatctttctta
||| || |||||||| |||||||| ||||| || || || || || || |||||||||||||| ||||| || ||||||||||| |||||||| ||||||||||| | || | ||| | | | | | || | ||| | | | | | | |||||||||||
TTTTGGCTATGGAATCATGCTTCTTGAGCTCATTACAGGACAAAGGGCATTTGATCTTGCTCGTCTTGCAAACGATGATGATGTGATGTTGCTCGATTGGgtaagtaccaccacatctttatatattggggcaaccatggaagttttggttttgtttttccttgtgcatgctagttgtcctccaggacacatctttctta
upper sequence: Vv18s0164g00070.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os08g07760.1 (Oryza sativa), 5'ss of exon 10
TTTCGGGTATGGAATTATGCTTCTGGAGCTAATCACTGGGCAGAGAGCTTTTGATCTTGCTCGGCTTGCCAATGATGATGATGTCATGTTGCTTGATTGGgtaagc-attactgtctttttccaccctatactgattagaccacttactgccccctttgccagtattttttaagctaacaggataaatgccatctttctta---
|| || ||||| ||||||||| ||||||| || || || || | || ||||| |||||||| || ||||||||||||||||||||| | || || ||||||| | || | ||| | | | | || || ||| | | ||| |||| | | || | | || || || || | |||
ATTTGGTTATGGGATTATGCTTTTGGAGCTTATAACAGGACAACGTGCCTTTGACCTTGCTCGTCTAGCCAATGATGATGATGTCATGCTACTGGACTGGgtaattgactagcacaatcttcaattcaa-attg--cagtccatattcatgcccttttgtggcttgatgttgtgttgggagt-tagataaaattacttttatgt
upper sequence: Vv18s0164g00070.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G150024_T01 (Zea mays), 5'ss of exon 10
TTTCGGGTATGGAATTATGCTTCTGGAGCTAATCACTGGGCAGAGAGCTTTTGATCTTGCTCGGCTTGCCAATGATGATGATGTCATGTTGCTTGATTGGgtaagcattactgtctttttccaccctatactg--attagaccacttactgccccctttgccagtattttttaagctaacaggataaatgccatctttctta
||| || ||||| || |||||||||||||| || ||||| ||||| || |||||||| ||||| ||||| |||||||||||||| ||| | ||||| |||||||| | | | |||| | ||| || | | || | | | | | | ||| | | | | | | || | ||
TTTTGGATATGGGATCATGCTTCTGGAGCTTATTACTGGACAGAGGGCATTTGATCTAGCTCGTCTTGCAAATGATGATGATGTTATGCTTCTTGACTGGgtaagtaa-attttcttctcaatagtcatagtgccacagtattaccgcactacagatatacatttttctttcataccattttgctgtctatgggctatatt-
upper sequence: Vv18s0164g00070.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G115420_T01 (Zea mays), 5'ss of exon 10
TTTCGGGTATGGAATTATGCTTCTGGAGCTAATCACTGGGCAGAGAGCTTTTGATCTTGCTCGGCTTGCCAATGATGATGATGTCATGTTGCTTGATTGGgtaagcattactgtctttttccaccctatactgattagaccacttactgccccctttgccagtattttttaagctaacaggataaatgccatcttt--ctta---
||| || ||||| || |||||||||||||| || ||||| ||||| || |||||||| ||||| ||||| |||||||| ||||| ||| | ||||| |||||||| | ||| | | | || | | | || || | || | | ||| |||| || || | ||| ||| | ||
TTTTGGCTATGGGATCATGCTTCTGGAGCTTATTACTGGCCAGAGGGCATTTGATCTAGCTCGTCTTGCAAATGATGACGATGTTATGCTTCTTGACTGGgtaagta-----aattttcttctcaatacaagtgtcacacacagtattaccgtgtgacagattatatttttttctttcatactttttgctgtctatgggctatat
upper sequence: Vv18s0164g00070.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G384439_T02 (Zea mays), 5'ss of exon 10
TTTCGGGTATGGAATTATGCTTCTGGAGCTAATCACTGGGCAGAGAGCTTTTGATCTTGCTCGGCTTGCCAATGATGATGATGTCATGTTGCTTGATTGGgtaagcattactgtctttttccaccctatactgattagaccac-----ttactgccccctttgccagtattttttaagctaacaggataaatgc-catctttctta
|| || |||||||||| ||| | ||||| || || || || | || || ||||| ||||| ||||| |||||||||||||||||| | ||||| |||||| | ||||| || | | || | | ||| ||| | || |||| |||| | || || | || ||| || ||||
ATTTGGCTATGGAATTACTCTTTTAGAGCTTATTACAGGACAACGTGCCTTCGATCTAGCTCGTCTTGCTAATGATGATGATGTCATGCTTCTTGACTGGgtagtta--actgtgccatttc-ctctgttcaaattgtaccccaagtgttcatgccttttttgt--ggcttccgtactgtgcaggggctggtgctcaccttttcc-
upper sequence: Vv18s0164g00070.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA10G36280.1 (Glycine max), 5'ss of exon 10
TTTCGGGTATGGAATTATGCTTCTGGAGCTAATCACTGGGCAGAGAGCTTTTGATCTTGCTCGGCTTGCCAATGATGATGATGTCATGTTGCTTGATTGGgtaagcattactgtctttttccaccctatactgattagaccacttactgccccctttgccagtattttttaagctaacagg-ataaatgccatctttctta--
||| || ||||| || |||||||||||||| |||||||| |||||||||||||| |||||||| || || ||||| |||||||| ||| |||||||||||||| | | | || || | ||| || || | | ||| | | |||| || | | | | | |||| || | | |
TTTTGGTTATGGTATCATGCTTCTGGAGCTGATCACTGGACAGAGAGCTTTTGACCTTGCTCGACTCGCTAATGACGATGATGTTATGCTGCTTGATTGGgtatgt-tgagtggaaaattatatccttg--tgtttttattatttatggtttaccttgcagttaaagtccatccaacccctcataattgttggagtaccaatt
upper sequence: Vv18s0164g00070.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA02G08360.1 (Glycine max), 5'ss of exon 8
TTTCGGGTATGGAATTATGCTTCTGGAGCTAATCACTGGGCAGAGAGCTTTTGATCTTGCTCGGCTTGCCAATGATGATGATGTCATGTTGCTTGATTGGgtaagcattactgtctttttccaccct-atactgattagaccacttactgccccctttgccagt--attttttaagctaacaggataaatgccatctttctta
|| |||||||| || ||||||||||||||||||||||| || || |||||||| | ||||| ||||| |||||||||||||| |||||||| ||||||||| | | ||| | | ||| | | || | ||| ||||| | | |||| || | | ||| || || ||||
CTTTGGGTATGGTATAATGCTTCTGGAGCTAATCACTGGACAAAGGGCTTTTGACTTGGCTCGACTTGCAAATGATGATGATGTTATGTTGCTGGATTGGgtatgt-tgactataaaagaatatccttgtgtttttttttttaattatatttacctttactgttgaatttcatacgacccctaagtaattgttttccttct--
upper sequence: Vv18s0164g00070.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA20G31320.1 (Glycine max), 5'ss of exon 10
TTTCGGGTATGGAATTATGCTTCTGGAGCTAATCACTGGGCAGAGAGCTTTTGATCTTGCTCGGCTTGCCAATGATGATGATGTCATGTTGCTTGATTGGgtaagcattactgtctttttccaccctatactgattagaccacttactgccccctttgccagtattttttaagctaacagg-ataaatgccatctttctta--
||| || ||||| || |||||||||||||| || ||||| |||||||||||||| |||||||| || || ||||| |||||||| ||| |||||||||||||| | ||| ||| | | ||| || || | ||| | ||| || || | || | | | || || |||
TTTTGGTTATGGTATCATGCTTCTGGAGCTGATAACTGGACAGAGAGCTTTTGACCTTGCTCGACTCGCTAATGACGATGATGTTATGCTGCTTGATTGGgtatgt-ttagtgtaaaagtatatccttg--tgtttttattttttataatttaccctgcagttaaattccatgcaatccctcaaaattgttgacttaggctgtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30302748|gb|CB979542.1|CB979542EST: TTGATCTTGCTCGGCTTGCCAATGATGATGATGTCATGTTGCTTGATTGG GTAAAAAGGACTTCTGAA
genomic: TTGATCTTGCTCGGCTTGCCAATGATGATGATGTCATGTTGCTTGATTGGgtaagcatta ... aatatctcagGTAAAA-GGACTTCTGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTCGGGTATGGAATTATGCTTCTGGAGCTAATCACTGGGCAGAGAGCTTTTGATCTTGCTCGGCTTGCCAATGATGATGATGTCATGTTGCTTGATTGGgtaagcattactgtctttttccaccctatactgattagaccacttactgccccctttgccagtattttttaagctaacaggataaatgccatctttctta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggataa