Sequence
atgc intronic sequence ATGC exonic sequenceATGAGACATTCCAGTTTATGGCAAGCGTATATAGTCGTTCTCATCACAACATGTCTTTGAGCAAGGAATTTGAAGGAGGAATTACAAATGGAGCATTTTGgtatgaaaatttagaattcaattctcatgatgttcatcaatcatgaacaagaaattgcattagtacgacagtttttctaagcttcctgattctacacttg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0157g00050.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os06g05240.1 (Oryza sativa), 5'ss of exon 10
ATGAGACATTCCAGTTTATGGCAAGCGTATATAGTCGTTCTCATCACAACATGTCTTTGAGCAAGGAATTTGAAGGAGGAATTACAAATGGAGCATTTTGgtatgaaa---atttagaat--tcaattctcatgatgttcatcaatcatgaacaagaaattgcattagtacgacagtttttctaagcttcctgattctacacttg---------
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ATAAGACATTCCGGTACATGGCATCAGTTTATAGTCAATCGCACTATAACATGTCTTTGAGCAAAGAATTTAAAGGAGGGATTACAAATGGAGCATTCTGgtataaaactagttttgtattattgctccttatcattttttttatttcatatcaa-acattttgttgctgctacttttcatgctaactagcaatctatgcttttttgtgttgag
upper sequence: Vv18s0157g00050.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G106683_T02 (Zea mays), 5'ss of exon 10
ATGAGACATTCCAGTTTATGGCAAGCGTATATAGTCGTTCTCATCACAACATGTCTTTGAGCAAGGAATTTGAAGGAGGAATTACAAATGGAGCATTTTGgt--atgaa-aatttagaattcaattctcat----gatgttcatcaatcatgaacaagaaattgcattagtacgacagtttt--tctaagcttcctgatt--ctacacttg--
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ATAAGACATTCCAGCACATGGCATCTGTGTATAGTCGGTCTCACTATAACATGTCTTTGAGCAAAGAATTTGAAGGAGGGATAACAAATGGAGCATTCTGgtaaacgaacaatagcaagttcatacttcatatgagatttcctttatctaggtactaggtaggttgtgtatgtgttggctttgaatcaaacaacatcattgcttgtggtccag
upper sequence: Vv18s0157g00050.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G127941_T01 (Zea mays), 5'ss of exon 8
ATGAGACATTCCAGTTTATGGCAAGCGTATATAGTCGTTCTCATCACAACATGTCTTTGAGCAAGGAATTTGAAGGAGGAATTACAAATGGAGCATTTTGgtatgaaaatttagaattcaattctcatgatgttcatcaatcatgaacaagaaattgcattagtacgacagtttttctaagcttcctgattctacacttg
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ATAAGACATTCCAGCACATGGCATCTGTGTATAGTCGGTCTCACTATAACATGTCTTTGAGCAAAGAATTTGAAGGAGGGATAACAAATGGAGCATTCTGgtaaacagac--aatagcaagttcatat----ttcataattcat----atgagatttcctttatctag--------------------------------
upper sequence: Vv18s0157g00050.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA20G31000.2 (Glycine max), 5'ss of exon 3
ATGAGACATTCCAGTTTATGGCAAGCGTATATAGTCGTTCTCATCACAACATGTCTTTGAGCAAGGAATTTGAAGGAGGAATTACAAATGGAGCATTTTGgtatgaaaatttagaattcaattctcatgatgttcatcaatcatgaacaagaaattgcattagtacgacagtttttctaagcttcctgattctacacttg
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ATGATGCATTTCGATTCATGTCAAGTATCTATAGTCACTCTCATTACAATATGTCTTCAAGCAAGGAATTTCTCGGTGGAATTACAAATGGAGCCGCATGgtattgctgtataaaagt--attgcatagtagttcatgactgaagtctgtttccttttaatatgtgcacaatttacaaatggtactcactgcag------
upper sequence: Vv18s0157g00050.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT1G71696.1 (Arabidopsis thaliana), 5'ss of exon 9
ATGAGACATTCCAGTTTATGGCAAGCGTATATAGTCGTTCTCATCACAACATGTCTTTGAGCAAGGAATTTGAAGGAGGAATTACAAATGGAGCATTTTGgtatgaaaatttagaattcaattctcatgatgttcatcaatcatgaacaagaaattgcattagtacgacagtttttctaagcttcctgattctacacttg
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ATGAGACATTCCGGTTCTTGGCACGTATATATAGCAAATCTCACCGTAATATGTCTTTGAGCAAAGAATTTGAGGAAGGAATCACCAATGGAGCATCCTGgtatcaca--------tcaagtccccttactctgtcttattca---acaaatgagtttcttggt----taatgctt-taagcaaaacg-ctctacag---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718235|gb|FC066954.1|FC066954EST: ATGTCTTTGAGCAAGGAATTTGAAGGAGGAATTACAAATGGAGCATTTTG GTACCCCATATATGGTGGCATGCAAGATTGGAACTATATACATGGTGGCTG
genomic: ATGTCTTTGAGCAAGGAATTTGAAGGAGGAATTACAAATGGAGCATTTTGgtatgaaaat ... ttttctgcagGTACCCCATATATGGTGGCATGCAAGATTGGAACTATATACATGGTGGCTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGAGACATTCCAGTTTATGGCAAGCGTATATAGTCGTTCTCATCACAACATGTCTTTGAGCAAGGAATTTGAAGGAGGAATTACAAATGGAGCATTTTGgtatgaaaatttagaattcaattctcatgatgttcatcaatcatgaacaagaaattgcattagtacgacagtttttctaagcttcctgattctacacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacaag