Sequence
atgc intronic sequence ATGC exonic sequenceTTATCAACCATATCTTATATCTCCTGAGAAAGGTTTGAGATCGTTAATAAAAGGTGTCTTGGAGCTTGCAAAAGAGCCATCACGGCTTTGTGTTGATGAGgtaaggataattattcataacttctgagtttccccttcttttgaagaatggatttgaatagccttgcggagttgctttcgatatttcagatgctttgctg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0089g00350.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os02g50550.1 (Oryza sativa), 5'ss of exon 10
TTATCAACCATATCTTATATCTCCTGAGAAAGGTTTGAGATCGTTAATAAAAGGTGTCTTGGAGCTTGCAAAAGAGCCATCACGGCTTTGTGTTGATGAGgtaaggataatt--attcataacttctg-agtttcc---ccttcttttgaagaatggatttgaatagccttg-cggagttgc-tttcgatatttcagatgctttgctg
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TTATCAACCATATTTGATATCTCCAGAGAAAGGTTTAAAATCCTTAATAAAAGGAGTACTTGAAATGGCAAAGGAGCCATCACGGCTGTGTGTTGAAGAGgtatgtcttttttgatcccctatatgtataatttactaactcacttaaaaaggtaaaatatgaatagttgagatgcaatttcatttttaccctttggatg--------
upper sequence: Vv18s0089g00350.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G157462_T01 (Zea mays), 5'ss of exon 10
TTATCAACCATATCTTATATCTCCTGAGAAAGGTTTGAGATCGTTAATAAAAGGTGTCTTGGAGCTTGCAAAAGAGCCATCACGGCTTTGTGTTGATGAGgtaaggataattattcataacttctgagtttccccttcttttgaagaatggatttgaatagccttgcggagttgctttcgatatttcagatgctttgctg---------
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TTATCAACCATATTTGATATCTCCAGAGAAAGGGTTGAGATCCTTAATAAAAATAGTACTGGAAATGGCAAAGGAGCCATCACGACTATGTGTTGAAGAGgtacgccccaa-----ataatcagtaagaaaataaaccaccagaattatgtgttagctt----ctacacatttacttttgttctcccctacccctcaagagacaaacaa
upper sequence: Vv18s0089g00350.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA09G00430.2 (Glycine max), 5'ss of exon 10
TTATCAACCATATCTTATATCTCCTGAGAAAGGTTTGAGATCGTTAATAAAAGGTGTCTTGGAGCTTGCAAAAGAGCCATCACGGCTTTGTGTTGATGAGgtaaggataattattcataactt---ctgagtttccccttcttttgaagaatggatttgaatagccttgcggagttgctttcgatatttca-gatgctttgctg
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TTATCAGCCGTATCTTATTTCCCCTGAAAAGGGATTGAGATCTCTAATCAAAGGGGTTCTAGAGCTTGCGAAAGAGCCATCACGTCTTTGTGTTGATGAGgtaattttt-ttatgtgtagaatgaacttgaattatatttaactttactctcaagtttctaaatggttgttgc-ttgttccttatattttgtagtgtttttc--
upper sequence: Vv18s0089g00350.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA12G37100.1 (Glycine max), 5'ss of exon 10
TTATCAACCATATCTTATATCTCCTGAGAAAGGTTTGAGATCGTTAATAAAAGGTGTCTTGGAGCTTGCAAAAGAGCCATCACGGCTTTGTGTTGATGAGgtaaggataat-tattcataactt-ctgagtttccccttcttttgaagaatggatttgaatagccttgcggagttgctttcgatatttca-gatgctttgctg
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TTATCAGCCTTATCTTATTTCCCCTGAAAAGGGATTGAGATCTCTAATCAAAGGTGTTCTAGAGCTTGCGAAAGAGCCGTCACGTCTTTGTGTTGATGAGgtaatttttttacatgtagaatgaacttgaattatatttaactttactctcaagtttctaaatgattgttgc-ttgttccttatatcttgtagtggttttc--
upper sequence: Vv18s0089g00350.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT1G10290.1 (Arabidopsis thaliana), 5'ss of exon 10
TTATCAACCATATCTTATATCTCCTGAGAAAGGTTTGAGATCGTTAATAAAAGGTGTCTTGGAGCTTGCAAAAGAGCCATCACGGCTTTGTGTTGATGAGgtaaggataattattcataacttctga-gtttccccttcttttgaagaatggatttgaatagccttgcggagttgctttcgatatttcagatgctttgctg
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TTATCAACCTTATCTTATATCTCCAGAGAAAGGGTTGAGATCGTTGATAAAGATTGTCCTTGAGTTGGCTAAAGACCCGGCACGCCTTTGTGTTGATGAGgtgtgcttgtttacatgtttttttaggtacatgcagtaggattgaattttagaaatttactgcattgtgaactggctatggcttgtctcactttaattct-
upper sequence: Vv18s0089g00350.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT1G59610.1 (Arabidopsis thaliana), 5'ss of exon 10
TTATCAACCATATCTTATATCTCCTGAGAAAGGTTTGAGATCGTTAATAAAAGGTGTCTTGGAGCTTGCAAAAGAGCCATCACGGCTTTGTGTTGATGAGgtaagg----ataattattcataactt--ctgagtttccccttcttttgaa-gaatggatttgaatagccttgcggagttgctttcgatatttcagatgctttgctg
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TTATCAACCTTATCTCATATCTCCAGAGAAAGGGTTGAGATCGTTAATAAAAACCGTTCTTGAGTTGGCTAAAGACCCAGCACGACTATGTGTTGATGAGgtgtgtccatgttagtgtttatagcttaactggtgttgtcttcctcttgtttgagatgcgtagcattgaaattcagaaatttactaaatagtg-aaatatt------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161717164|gb|FC065927.1|FC065927EST: AAGGTGTCTTGGAGCTTGCAAAAGAGCCATCACGGCTTTGTGTTGATGAG GTGCACCGTGTCCTGGTAGATGTAGTTTCTGCTGCTGCAAATGCTACGCCA
genomic: AAGGTGTCTTGGAGCTTGCAAAAGAGCCATCACGGCTTTGTGTTGATGAGgtaaggataa ... tgaaacatagGTGCACCGTGTCCTGGTAGATGTAGTTTCTGCTGCTGCAAATGCTACGCCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTATCAACCATATCTTATATCTCCTGAGAAAGGTTTGAGATCGTTAATAAAAGGTGTCTTGGAGCTTGCAAAAGAGCCATCACGGCTTTGTGTTGATGAGgtaaggataattattcataacttctgagtttccccttcttttgaagaatggatttgaatagccttgcggagttgctttcgatatttcagatgctttgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagaat