Sequence
atgc intronic sequence ATGC exonic sequenceCTATAACACCAAGAAATCCAACTTGAAGTTGTATGTTAGACGTGTATTCATTTCTGAAGAATTTGATGAGCTTTTGCCCAAGTATCTGAACTTTTTGAAGgttataaatcaatttataaattcctattgggttcttgtaaactggagaatttatgaattaggtttagaagtgattctaaatgggtgacgttttgagcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g14500.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os06g50300.1 (Oryza sativa), 5'ss of exon 10
CTATAACACCAAGAAATCCAACTTGAAGTTGTATGTTAGACGTGTATTCATTTCTGAAGAATTTGATGAGCTTTTGCCCAAGTATCTGAACTTTTTGAAGgttataaatcaatttataaattcctattgggttcttgtaaactggagaatttatgaa--ttaggtttagaagtgattctaaatgggtgacgttttgagcag
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CTACAACTCTAACAAGTCAAACCTTAAGTTGTATGTTAGAAGGGTTTTCATCTCTGATGAATTTGATGAGCTTCTTCCGAAGTATCTCAGCTTTTTGAAGgtactagattactatttcatgaacgacacggtattcc---attcattgacttatgcagcctaaacctataagctattatctgtag----------------
upper sequence: Vv18s0001g14500.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G141931_T02 (Zea mays), 5'ss of exon 10
CTATAACACCAAGAAATCCAACTTGAAGTTGTATGTTAGACGTGTATTCATTTCTGAAGAATTTGATGAGCTTTTGCCCAAGTATCTGAACTTTTTGAAGgttataaatca--atttataaattcctattgggttct-tgtaaactggagaatttatgaattaggtttagaagtgattctaaatgggtgacgttttgagcag
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CTACAACAGTAACAAGTCAAACCTCAAGTTGTATGTTAGGAGAGTTTTCATCTCTGACGAATTTGATGATCTTCTTCCCAAGTACCTGAGCTTTTTGAAGgtactgtattactgtttcaagaaacgcgtactattcaattcaatctgatgtcatagcaggctaaaccttacagtggttttatctgtag--------------
upper sequence: Vv18s0001g14500.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G399073_T02 (Zea mays), 5'ss of exon 12
CTATAACACCAAGAAATCCAACTTGAAGTTGTATGTTAGACGTGTATTCATTTCTGAAGAATTTGATGAGCTTTTGCCCAAGTATCTGAACTTTTTGAAGgttataaatc---aatttataaattcctattgggttcttgtaaactggagaatttatgaattaggtttagaagtgat--tctaaatgggtgacgttttgagcag
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CTACAACAGCAACAAGTCAAACCTCAAGTTGTATGTTAGAAGAGTGTTCATCTCTGATGAATTTGATGACCTTCTTCCGAAGTATCTCAGCTTTTTGAGGgtactatattgctacttcaagagcaaatatacaattaatttgaaaggcatatgttat--actaaatcttacagtgatattctctctag----------------
upper sequence: Vv18s0001g14500.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA14G40320.3 (Glycine max), 5'ss of exon 10
CTATAACACCAAGAAATCCAACTTGAAGTTGTATGTTAGACGTGTATTCATTTCTGAAGAATTTGATGAGCTTTTGCCCAAGTATCTGAACTTTTTGAAGgttataaatcaatttataaattcctattg--ggttcttgtaaactg-gagaat--ttatgaattaggtttagaagtgattctaaatgggtgacgttttgagcag
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TTATAACGCAAACAAATCGAACCTGAAGTTGTATGTTAGACGTGTGTTCATTTCAGATGAATTTAATGAACTGTTGCCCAAGTACCTAAACTTTTTGCTGgt-aggcattg--ttgtgctttgttattgcagataaatatattttatgaggatcataataatttttgctaacaaatgtttcttt-----tgacgttgggaacag
upper sequence: Vv18s0001g14500.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA17G37820.1 (Glycine max), 5'ss of exon 10
-CTATAACACCAAGAAATCCAACTTGAAGTTGTATGTTAGACGTGTATTCATTTCTGAAGAATTTGATGAGCTTTTGCCCAAGTATCTGAACTTTTTGAAGgttataaatcaatttataaattcctattg-ggttcttgtaaactggagaatt-tatgaattaggtttagaagtgattctaaatgggtgacgttttgagcag
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ATTATAACGCAAACAAATCCAACCTGAAGTTGTATGTTAGACGTGTGTTCATTTCAGATGAATTTAATGAACTGTTGCCTAAGTACCTAAACTTTTTGCTggt-aggaattg--ttgtgctttgttattgcagataaaatatattttatgatgatcagaataatttttgctaataaatgttacttt-tgacgttgggaaca-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294967276|gb|GW840151.1|GW840151EST: TTTCTGAAGAATTTGATGAGCTTTTGCCCAAGTATCTGAACCTTTTGAAG GGTCTTGTAGATTCCGACACGTTACCTCTTAATGTTTCACGAGAAATGCTT
genomic: TTTCTGAAGAATTTGATGAGCTTTTGCCCAAGTATCTGAACTTTTTGAAGgttataaatc ... ttttgagcagGGTCTTGTAGATTCCGACACGTTACCTCTTAATGTTTCACGAGAAATGCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTATAACACCAAGAAATCCAACTTGAAGTTGTATGTTAGACGTGTATTCATTTCTGAAGAATTTGATGAGCTTTTGCCCAAGTATCTGAACTTTTTGAAGgttataaatcaatttataaattcctattgggttcttgtaaactggagaatttatgaattaggtttagaagtgattctaaatgggtgacgttttgagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG