1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTTTTGTTACTTGGTCAATCCGCTGGAAAAACAGACAGGCTTTACATGAAAGGTCCTGGAGGGCGTGGGGAAGTTGAAGTGGCTGTTTCCGGTGTTGCAGgtagtaaggaactttcttctacttgatttagctaggttataaaagccggtttcatttcttattttggtctagaatatttgctcagcgctcaaaacttaaa...
species | Vitis vinifera |
transcript | Vv18s0001g08720.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AGGTCCTGGAGGGCGTGGGGAAGTTGAAGTGGCTGTTTCCGGTGTTGCAG ATCAAAGCCAGCAGCCATCAGGCCCTTCTTCGCCCGTTCATGCATCCAAGAEST: gi|110714422|gb|EE091311.1|EE091311
genomic: AGGTCCTGGAGGGCGTGGGGAAGTTGAAGTGGCTGTTTCCGGTGTTGCAGgtagtaagga ... tgttaattagATCAAAGCCAGCAGCCATCAGGCCCTTCTTCGCCCGTTCATGCATCCAAGA
EST: AGGCCCTGGAGGGCGTGGGGAAGTTGAAGTGGCTGTTTCCGGTGTTGCAG ATCAAAGCCAGCAGCCATCAGGCCCTTCTTCGCCCGTTCATGCATCCAAGAEST: gi|110412818|gb|EC978580.1|EC978580
genomic: AGGTCCTGGAGGGCGTGGGGAAGTTGAAGTGGCTGTTTCCGGTGTTGCAGgtagtaagga ... tgttaattagATCAAAGCCAGCAGCCATCAGGCCCTTCTTCGCCCGTTCATGCATCCAAGA
EST: AGGTCCTGGAGGGCGTGGGGAAGTTGAAGTGGCTGTTTCCGGTGTTGCAG ATCAAAGCCAGCAGCCATCAGGCCCTTCTTCGCCCGTTCATGCATCCAAGAEST: gi|30134936|gb|CB920274.1|CB920274
genomic: AGGTCCTGGAGGGCGTGGGGAAGTTGAAGTGGCTGTTTCCGGTGTTGCAGgtagtaagga ... tgttaattagATCAAAGCCAGCAGCCATCAGGCCCTTCTTCGCCCGTTCATGCATCCAAGA
EST: AGGTCCTGGAGGGCGTGGGGAAGTTGAAGTGGCTGTTTCCGGTGTTGCAG ATCAAAGCCAGCAGCCATCAGGCCCTTCTTCGCCCGTTCATGCATCCAAGA
genomic: AGGTCCTGGAGGGCGTGGGGAAGTTGAAGTGGCTGTTTCCGGTGTTGCAGgtagtaagga ... tgttaattagATCAAAGCCAGCAGCCATCAGGCCCTTCTTCGCCCGTTCATGCATCCAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTTGTTACTTGGTCAATCCGCTGGAAAAACAGACAGGCTTTACATGAAAGGTCCTGGAGGGCGTGGGGAAGTTGAAGTGGCTGTTTCCGGTGTTGCAGgtagtaaggaactttcttctacttgatttagctaggttataaaagccggtttcatttcttattttggtctagaatatttgctcagcgctcaaaacttaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaggaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tataaaa