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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGACTATGAAGACAAAATCAATCAGGCTGTCTTTCCTGGACTTCAAGGTGGACCACACAATCATACTATTTCTGGCTTAGCAGTTGCATTGAAACAGgttatttatctaaagtatttccaactggaatacaattttttggatctcatttcattcaaagctgattttgattcatttctttgactattctgtggttgtag

Basic information

species Vitis vinifera
transcript Vv18s0001g07960.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g07960.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 10
GTATGACTATGAAGACAAAATCAATCAGGCTGTCTTTCCTGGACTTCAAGGTGGACCACACAATCATACTATTTCTGGCTTAGCAGTTGCATTGAAACAGgttatttatctaaagtatttccaactggaatacaattttttggatctcatttcattcaaagctgattttgattcatttctttgactattctgtggttgtag
|||||||| ||| ||||| ||||||   |||||||| || || || |||||||||||||| |||||||| ||| |||||||||| |||||  | || |||||  | || |     |  | ||   ||   || | |||| | |||| ||||   ||      ||  || || ||  |     |||| ||||    ||  ||
GTATGACTTTGAGGACAAGATCAATGCTGCTGTCTTCCCAGGTCTGCAAGGTGGACCACATAATCATACCATTACTGGCTTAGCTGTTGCGCTTAAGCAGgtc-tgtagcacttctgatccctgatgttttata-ttttatagatcacatt--gtttgcctttgtcttggactc--taaaaggact-ttcta-acttccag

upper sequence: Vv18s0001g07960.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G135283_T02 (Zea mays), 5'ss of exon 9
GTATGACTATGAAGACAAAATCAATCAGGCTGTCTTTCCTGGACTTCAAGGTGGACCACACAATCATACTATTTCTGGCTTAGCAGTTGCATTGAAACAGgt-tatttatctaaagtatttccaactggaatacaattttttggatctcatttcattcaaagctgattttgattcatttctttgactattctgtggttgtag
|||||| | ||| ||||||||||||   |||||||||||||| || |||||||| || || || ||||| ||| ||||||| || |||||  | |||||||| |  |   || |   || |     |  ||||  ||  |||     |||| |  ||     ||  || ||| || | ||      |||| | |  ||  ||
GTATGATTTTGAGGACAAAATCAATGCTGCTGTCTTTCCTGGTCTGCAAGGTGGGCCTCATAACCATACCATTACTGGCTTGGCTGTTGCGCTCAAACAGgtctgctccacttattcatgttg---tttaatattatccttta---ttcatattgtttgc--ctttttatgagtc-tctcagcttttattttatattt-cag

upper sequence: Vv18s0001g07960.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA02G38160.2 (Glycine max), 5'ss of exon 10
GTATGACTATGAAGACAAAATCAATCAGGCTGTCTTTCCTGGACTTCAAGGTGGACCACACAATCATACTATTTCTGGCTTAGCAGTTGCATTGAAACAGgttatttatct--------aaagtatttccaactggaatacaattttttgga----tctcatttcattcaaagctgattttgattcatttctt-tgactattctgtggttgtag-------------------------------
||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||||| | ||  |        |||| |  |  |  |   |||   ||   || |    | ||||||  |  |||    ||  ||||   | |  |    || ||    || |  ||                               
GTATGACTATGAAGACAGAATAAATCAGGCTGTTTTTCCTGGACTTCAAGGTGGTCCACACAATCACACTATTTCTGGCTTAGCAGTTGCACTGAAGCAGgttctataattgactaggcaaagaaactgtagttattatagttttccatgtaaacatttcattttctataaaaac-ataatgatcattcttgtacatctgttgccaggcttaagttcagttctttcttcatttctgtaaatgtag

upper sequence: Vv18s0001g07960.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA14G36280.1 (Glycine max), 5'ss of exon 10
GTATGACTATGAAGACAAAATCAATCAGGCTGTCTTTCCTGGACTTCAAGGTGGACCACACAATCATACTATTTCTGGCTTAGCAGTTGCATTGAAACAGgttatttatct--------aaagtatttccaactggaatacaattttttggatctcatttcattcaaagctgattttgattcatttctttgactattctgtggttgtag----------------------------------------
||||||||||||||||||||| || |||||||| |||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||| |||| |||||| ||||  |        |||| |  |  |  |   |||   | |  | |    |||||  |||       |     | |  |   | |    | ||||| |                                              
GTATGACTATGAAGACAAAATAAACCAGGCTGTTTTTCCTGGACTTCAAGGTGGTCCACACAATCACACTATTTCAGGCTTAGCAGTTGCACTGAAGCAGgttctttaattgactaggcaaagaaactgtagttattatagtttctcctagtaaacatttttttctctataaaaacataatggtcattcttgtaaatctgttgccaggcttatgtaagtccagttctttcttcatttctgtaaatgtag

upper sequence: Vv18s0001g07960.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT5G26780.3 (Arabidopsis thaliana), 5'ss of exon 10
GTATGACTATGAAGACAAAATCAATCAGGCTGTCTTTCCTGGACTTCAAGGTGGACCACACAATCATACTATTTCTGGCTTAGCAGTTGCATTGAAACAGgtt-atttatctaaagtatttccaactggaatacaattttttg----gatctcat----ttcattcaaag-ctgattttgattcatttctttgactattctgtggttgtag--------------------------------------------
|||||||||||| |||| ||| ||||| ||||| ||||||||||| |||||||| ||||| ||||| |||||  | ||  ||||||||||  |||| |||||| | | ||| ||  | | |  ||   |  | | ||| | |     | || |||    | | ||||    ||||||  | |  | | ||  || | |  ||   |||||                                             
GTATGACTATGAGGACAGAATTAATCAAGCTGTTTTTCCTGGACTGCAAGGTGGTCCACATAATCACACTATAACGGGTCTAGCAGTTGCTCTGAAGCAGgttcagtcatcaaacttttattgaaactgtgttccattgtctaatgtgttcgcatgatctcctttcactttctgattaaggtctact-ctaggattctcttggtcttgtaactcttgttcatgatcttttgacttatcgatttgttctattatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161709499|gb|FC058863.1|FC058863
EST:     GTGGACCACACAATCATACTATTTCTGGCTTAGCAGTTGCATTGAAACAG                         GCCATGACTCCAGAGTACAAGGCTTATCAAGAGCAAGTCCTTACTAATTGC
genomic: GTGGACCACACAATCATACTATTTCTGGCTTAGCAGTTGCATTGAAACAGgttatttatc ... gtggttgtagGCCATGACTCCAGAGTACAAGGCTTATCAAGAGCAAGTCCTTACTAATTGC
EST: gi|110383662|gb|EC948045.1|EC948045
EST:     GTGGACCACACAATCATACTATTTCTGGCTTAGCAGTTGCATTGAAACAG                         GCCATGACTCCAGAGTACAAGGCTTATCAAGAGCAAGTCCTTACTAATTGC
genomic: GTGGACCACACAATCATACTATTTCTGGCTTAGCAGTTGCATTGAAACAGgttatttatc ... gtggttgtagGCCATGACTCCAGAGTACAAGGCTTATCAAGAGCAAGTCCTTACTAATTGC
EST: gi|110361032|gb|EC924482.1|EC924482
EST:     GTGGACCACACAATCATACTATTTCTGGCTTAGCAGTTGCATTGAAACAG                         GCCATGACTCCAGAGTACAAGGCTTATCAAGAGCAAGTCCTTACTAATTGC
genomic: GTGGACCACACAATCATACTATTTCTGGCTTAGCAGTTGCATTGAAACAGgttatttatc ... gtggttgtagGCCATGACTCCAGAGTACAAGGCTTATCAAGAGCAAGTCCTTACTAATTGC
EST: gi|351022221|gb|FQ438806.1|FQ438806
EST:     GTGGACCACACAATCATACTATTTCTGGCTTAGCAGTTGCATTGAAACAG                         GCCATGACTCCAGAGTACAAGGCTTATCAAGAGCAAGTCCTTACTAATTGC
genomic: GTGGACCACACAATCATACTATTTCTGGCTTAGCAGTTGCATTGAAACAGgttatttatc ... gtggttgtagGCCATGACTCCAGAGTACAAGGCTTATCAAGAGCAAGTCCTTACTAATTGC
EST: gi|351043008|gb|FQ434449.1|FQ434449
EST:     GTGGACCACACAATCATACTATTTCTGGCTTAGCAGTTGCATTGAAACGG                         GCCATGACTCCAGAGTACAAGGCTTATCAAGAGCAAGTCCTTACTAATTGC
genomic: GTGGACCACACAATCATACTATTTCTGGCTTAGCAGTTGCATTGAAACAGgttatttatc ... gtggttgtagGCCATGACTCCAGAGTACAAGGCTTATCAAGAGCAAGTCCTTACTAATTGC