Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCAACAATGTGGTCTTGTTAGGAACAAAGAGGAGATAAAAAGGCTTGCAAGCGAACTAAAACCACTGTCAGATAAGGCTACTATGTCTTCATCTTCCCgtatccttctttaatgctgagaactatcaatgattagtcgcaataccatattatgattactgacaatatgattacagtaatttctttcttggaagctttt...

Basic information

species Vitis vinifera
transcript Vv18s0001g03730.t01
intron # 10
splice site 5'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30136335|gb|CB921673.1|CB921673
EST:     AAGCGAACTAAAACCACTGTCAGATAAGGCTACTATGTCTTCATCTTCCC                         ATTATGTAGAAGCTANCTTCA-TCTATAAGACT-ATTGAGAAGC
genomic: AAGCGAACTAAAACCACTGTCAGATAAGGCTACTATGTCTTCATCTTCCCgtatccttct ... cagaatttagATTATGTAGAAGCTA-CTTCAATCTATAAGA-TGATTGAGAAGC
EST: gi|30126004|gb|CB911343.1|CB911343
EST:     AAGCGAACTAAAACCACTGTCAGATAAGGCTACTATGTCTTCATCTTCCC                         ATTATGTAGAAGCTACTTC
genomic: AAGCGAACTAAAACCACTGTCAGATAAGGCTACTATGTCTTCATCTTCCCgtatccttct ... cagaatttagATTATGTAGAAGCTACTTC