Sequence
atgc intronic sequence ATGC exonic sequenceCTGGTGGGGAGTTTCCTAATCAGAATCCACGTGTTGGTGAGGGATTGGCTACATGGGTTAAGCAGAATCGTCCTCTGGAGGAAACTGATATAGTTCTCTGgttggttaaaactatcatcatattcaatctatcatgatgctggatttctcatacccagaaattttatttcttcctaaaaaagtgacattttctacttgac...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g09100.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os04g40040.1 (Oryza sativa), 5'ss of exon 11
CTGGTGGGGAGTTTCCTAATCAGAATCCACGTGTTGGTGAGGGATTGGCTACATGGGTTAAGCAGAATCGTCCTCTGGAGGAAACTGATATAGTTCTCTGgttggttaaaactatcatcatattcaatctatcatgatgctggatttctcatacccagaaattttatttcttcctaaaaaagtgacattttctacttgac
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CTGGAGGGGAGTTCCCCAATCAGAATCCACGTATCCACGAGGGCTTAGCTACCTGGGTCAAGAAGGATAGGCCCCTGGAGGAAACTGACATTGTTCTCTGgt-----atacttgctactacgatgcatctgt-gtaactttcttcggttcacgactgggaatattgttgttaactataca--ctgcatctgcag------
upper sequence: Vv17s0000g09100.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA06G18810.1 (Glycine max), 5'ss of exon 10
CTGGTGGGGAGTTTCCTAATCAGAATCCACGTGTTGGTGAGGGATTGGCTACATGGGTTAAGCAGAATCGTCCTCTGGAGGAAACTGATATAGTTCTCTGgttggttaaaactatcatcatat-tcaatctatca-tgatgctggatttctcatacccagaaattttatttcttcctaaaaaagtgacattttctacttgac
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CTGGAGGAGAATTTCCTAATCAAAATCCACGTGTTGGTGAAGGACTAGCTACATGGGTTAAGCAGAACCGATCTTTGGAAGAAACTAATGTAGTTCTTTGgtaaaccttccccctcttttttcctcattctctgactcatgc-acctacctgacttcatgaaatcgttcttcagggtttatacttaatattttacaaaaaa-
upper sequence: Vv17s0000g09100.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA17G09290.1 (Glycine max), 5'ss of exon 10
CTGGTGGGGAGTTTCCTAATCAGAATCCACGTGTTGGTGAGGGATTGGCTACATGGGTTAAGCAGAATCGTCCTCTGGAGGAAACTGATATAGTTCTCTGgttggttaaaactatcatcatattcaatctatcatgatgctggatttctcatacccagaaattttatttcttcctaaaaaagtgacattttctacttgac---
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CTGGGGGAGAATTTCCTAATCAAAATCCACGTGTCAGCCAAGGACTAGCTACATGGGTTAAGCAAAACCGATCATTGGAAGAAACTGATATAGTTCTTTGgtcctctct--ctctcg-cacatccattttttgaaaatatttctggataaatattttgtatttataaaatttgtaaaactaattaaattagtaaagtaccactMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110384772|gb|EC949232.1|EC949232EST: ACATGGGTTAAGCAGAATCGTCCTCTGGAGGAAACTGATATAGTTCTGTG GTATGTTTTTGGACTTGTACATGTGCCTCGCTTGGAAGACTGGCCTGTTAT
genomic: ACATGGGTTAAGCAGAATCGTCCTCTGGAGGAAACTGATATAGTTCTCTGgttggttaaa ... tgaatttcagGTATGTTTTTGGACTTGTACATGTGCCTCGCTTGGAAGACTGGCCTGTTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGGTGGGGAGTTTCCTAATCAGAATCCACGTGTTGGTGAGGGATTGGCTACATGGGTTAAGCAGAATCGTCCTCTGGAGGAAACTGATATAGTTCTCTGgttggttaaaactatcatcatattcaatctatcatgatgctggatttctcatacccagaaattttatttcttcctaaaaaagtgacattttctacttgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaaaaa