1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTTCATGGCTGGCTTAGGAAATGGTTCTTTGACTGGGTCTATACTGCCTAATTCTTCCTCTTCTTCTCAATTGGCTAAAGACTCCCCTCTGATGGATGAGgtatcttcataatgaccttttttttttttttttttttcagtttgatgcatttgtatatatgtatgactgatggggtggggggaggataaaagtgttcttt...
species | Vitis vinifera |
transcript | Vv17s0000g04650.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ATTCTTCCTCTTCTTCTCAATTGGCTAAAGACTCCCCTCTGATGGATGAG ATATTAGTTGTTGTGCGTGGGCAACGTCEST: gi|110423731|gb|EC990082.1|EC990082
genomic: ATTCTTCCTCTTCTTCTCAATTGGCTAAAGACTCCCCTCTGATGGATGAGgtatcttcat ... tttttgacagATATTAGTTGTTGTGCGTGGGCAACGTC
EST: ATTCTTCCTCTTCTTCTCAATTGGCTAAAGACTCCCCTCTGATGGATGAG ATATTAGTTGTTGTGCGTGGGCAACGTCAGATAATGCATCAATTAGACAAT
genomic: ATTCTTCCTCTTCTTCTCAATTGGCTAAAGACTCCCCTCTGATGGATGAGgtatcttcat ... tttttgacagATATTAGTTGTTGTGCGTGGGCAACGTCAGATAATGCATCAATTAGACAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCATGGCTGGCTTAGGAAATGGTTCTTTGACTGGGTCTATACTGCCTAATTCTTCCTCTTCTTCTCAATTGGCTAAAGACTCCCCTCTGATGGATGAGgtatcttcataatgaccttttttttttttttttttttcagtttgatgcatttgtatatatgtatgactgatggggtggggggaggataaaagtgttcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggggag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gataaaa