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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAACTTTATCAGATATTCTCAGGCAACTTGgtaaggctcagttttcgatttatcatgctaaaaatttgtggtaattttaatttaactcgacctcttgtcgaatgtggctgatttag

Basic information

species Vitis vinifera
transcript Vv17s0000g00960.t01
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30301837|gb|CB978631.1|CB978631
EST:     GCAACTTTATCAGATATTCTCAGGCAACTTG                         GTACCCACTTTGACTTGGATCTAATGCATAGAAAGACAGAGGTGAAGGCTA
genomic: GCAACTTTATCAGATATTCTCAGGCAACTTGgtaaggctca ... gctgatttagGTACCCACTTTGACTTGGATCTAATGCATAGAAAGACAGAGGTGAAGGCTA
EST: gi|32245822|gb|CD711641.1|CD711641
EST:     GCAACTTTATCAGATATTCTCAGGCAACTTG                         GTACCCACTTTGACTTGGATCTAATGCATAGAAAGACAGAGGTGAAGGCTA
genomic: GCAACTTTATCAGATATTCTCAGGCAACTTGgtaaggctca ... gctgatttagGTACCCACTTTGACTTGGATCTAATGCATAGAAAGACAGAGGTGAAGGCTA
EST: gi|352772615|gb|FQ472090.1|FQ472090
EST:     GCAACTTTATCAGATATTTTCAGGCAACTTG                         GTACCCACTTTGACTTGGATCTAATGCATAGAAAGACAGAGGTGAAGGCTA
genomic: GCAACTTTATCAGATATTCTCAGGCAACTTGgtaaggctca ... gctgatttagGTACCCACTTTGACTTGGATCTAATGCATAGAAAGACAGAGGTGAAGGCTA
EST: gi|352773138|gb|FQ470753.1|FQ470753
EST:     GCAACTTTATCAGATATTCTCAGGCAACTTG                         GTACCCACTTTGACTTGGATCTAATGCATAGAAAGACAGAGGTGAAGGCTA
genomic: GCAACTTTATCAGATATTCTCAGGCAACTTGgtaaggctca ... gctgatttagGTACCCACTTTGACTTGGATCTAATGCATAGAAAGACAGAGGTGAAGGCTA
EST: gi|77579499|gb|DV218588.1|DV218588
EST:     GCAACTTTATCAGATATTCTCAGGCAACTTG                         GTACCCACTTTGACTTGGATCTAATGCATAGAAAGACAGAGGTGAAGGCTA
genomic: GCAACTTTATCAGATATTCTCAGGCAACTTGgtaaggctca ... gctgatttagGTACCCACTTTGACTTGGATCTAATGCATAGAAAGACAGAGGTGAAGGCTA
EST: gi|110363707|gb|EC927317.1|EC927317
EST:     GCAACTTTATCAGATATTCTCAGGCAACTTG                         GTACCCACTTTGACTTGGATCTAATGCATAGAAAGACAGAGGTGAAGGCTA
genomic: GCAACTTTATCAGATATTCTCAGGCAACTTGgtaaggctca ... gctgatttagGTACCCACTTTGACTTGGATCTAATGCATAGAAAGACAGAGGTGAAGGCTA