Sequence
atgc intronic sequence ATGC exonic sequenceTTGATCATGTTGAACAAACTGGCGGGAGGGTTCTGGTTCATTGCTTTGAAGGGAGAAGTAGAAGTGCTACGTTAGTTCTTGCTTACTTGATGCTCAGGAAgtaagtaaaataaaacaaattacatactggcaagcaaaaccgaaagttttatattgttttcatgctgtcattggacccacgcattgtagaccttaaacct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g00360.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os01g20940.1 (Oryza sativa), 5'ss of exon 10
TTGATCATGTTGAACAAACTGGCGGGAGGGTTCTGGTTCATTGCTTTGAAGGGAGAAGTAGAAGTGCTACGTTAGTTCTTGCTTACTTGATGCTCAGGAAgtaagtaaaataaaacaaattacatactggcaagcaa--aaccgaaagttttatattgttttcatgctgtcattggacccacgcattgtagaccttaaacct-------
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TCGATCATGTAGATCATGTTGGAGGCAAGGTTCTTGTTCATTGCTTTGAAGGAAAAAGTCGGAGTGCCACAATTGTGCTTGCCTACCTGATGCTCAGAAAgtaag--aaatttaact--ttgta-actagcaatcttccgttggcaaattatgtggtaatgtcacacaagaacctcacccatgc-ctgctgacaaaacacttatttcag
upper sequence: Vv17s0000g00360.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA08G01160.1 (Glycine max), 5'ss of exon 11
TTGATCATGTTGAACAAACTGGCGGGAGGGTTCTGGTTCATTGCTTTGAAGGGAGAAGTAGAAGTGCTACGTTAGTTCTTGCTTACTTGATGCTCAGGAAgtaagtaaaataaaacaaattacatactggcaagcaaaaccgaaagttttatattgttttcatgctgtcattggacccacgcattgtagaccttaaacct----
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TAGACTATGTTGAACAAACAGGTCAAAAAGTTTTAGTTCATTGCTTTGAGGGGAGAAGCAGAAGTGTCACGTTGGTCCTCGCTTACTTAATGCTCAGGAAgtaagtaaaaatgaaaattatagaagacataattctagtacaaaa---tgatactatgcaaagattattaatag-ctaatatatttaacaccacaagtgaactg
upper sequence: Vv17s0000g00360.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA05G38500.1 (Glycine max), 5'ss of exon 8
TTGATCATGTTGAACAAACTGGCGGGAGGGTTCTGGTTCATTGCTTTGAAGGGAGAAGTAGAAGTGCTACGTTAGTTCTTGCTTACTTGATGCTCAGGAAgtaagtaaaataaaacaaattacatactg-gcaagcaaaaccgaaagttttatattgttttcatgctgtcattggacccacgcattgtagacct-taaacct---
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TAGACTTTGTTGAACAAACAGGTCAAAAAGTTTTAGTTCATTGCTTTGAGGGGAGAAGCAGAAGTGTCACGTTGGTCCTCGCTTACTTAATGCTCAGGAAgtaagtaagaatgaa--aattatataagacataattctagtacaaaatg--ataccgtcctctagcatcaatcaatattgca-atagtaattaaataaatgaata
upper sequence: Vv17s0000g00360.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA04G37730.1 (Glycine max), 5'ss of exon 10
TTGATCATGTTGAACAAACTGGCGGGAGGGTTCTGGTTCATTGCTTTGAAGGGAGAAGTAGAAGTGCTACGTTAGTTCTTGCTTACTTGATGCTCAGGAAgtaagtaaaa-taaaacaaattacatactggcaagcaaaaccgaaagttttatattgttttcatgctgtcattggacccacgc-attgtagaccttaaacct
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TAGATTATGTTGAACAAGCTGGTCACAGTGTTTTAGTTCATTGCTTCGAGGGGAAAAGCAGAAGTGCTACTTTGGTCCTTGCTTACCTGATGCTTAGAAAgtaagtaaaaatataaataagcatatg-tgattattgaaactgaggttgctgtggagctgaccctccataacca-atcaacatgataattgtaattaaataaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30135677|gb|CB921015.1|CB921015EST: GGGAGAAGTAGAAGTGCTACGTTAGTTCTTGCTTACTTGATGCTCAGGAA GAACTTCACTCTATTAGAAGCATGGAATGCCCTAAAACGAGTACACCGCCG
genomic: GGGAGAAGTAGAAGTGCTACGTTAGTTCTTGCTTACTTGATGCTCAGGAAgtaagtaaaa ... tttcatgcagGAACTTCACTCTATTAGAAGCATGGAATGCCCTAAAACGAGTACACCGCCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGATCATGTTGAACAAACTGGCGGGAGGGTTCTGGTTCATTGCTTTGAAGGGAGAAGTAGAAGTGCTACGTTAGTTCTTGCTTACTTGATGCTCAGGAAgtaagtaaaataaaacaaattacatactggcaagcaaaaccgaaagttttatattgttttcatgctgtcattggacccacgcattgtagaccttaaacct
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcaaaa