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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGCAGACGGAGAGTACTGTGAGATTGTTACTGGACCAAACATGGGTGGAAAGAGTTGCTATATTCGCCAAGTGGCTCTCATTGCTATCATGGCCCAGgtagaaccagcacttgacattatttgctcatgatccacattttatttgcttatgaccctgctgcttgttttccttgtgctgttaaacccctgacatacgt...

Basic information

species Vitis vinifera
transcript Vv16s0100g01310.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0100g01310.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os04g58630.2 (Oryza sativa), 5'ss of exon 10
GCATGCAGACGGAGAGTACTGTGAGATTGTTACTGGACCAAACATGGGTGGAAAGAGTTGCTATATTCGCCAAGTGGCTCTCATTGCTATCATGGCCCAGgtagaaccagcacttgacatt----atttgctcatgatccacattttatttgcttatgaccctgctgctt--gttttccttgtgctgttaaacccctgacatacgt------------------------------------------------------------------------
 |||||| |  | ||||||||  |||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||| ||| |  | |||||||||||| ||  |     | ||| |     ||  |||||| |  |||| || |     ||| ||   | | ||      ||  ||||   | | |   |||||   | ||                                                                        
TCATGCAAATAGTGAGTACTGCCAGATTGTTACAGGACCAAACATGGGAGGAAAGAGTTGCTATATTCGTCAAGTTGCTCTAATTACATTGATGGCCCAGgtataaatattgtctcacacttgtagttcactcatg-ttaacatgttctggatgtataacatagttactgcaaacttagttgttgggcttaggacctgaggaa-gtaagggtttactttgttgttatcttaccctgactctgagattatcctaacacttggtacactgatttccttag

upper sequence: Vv16s0100g01310.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA20G29680.1 (Glycine max), 5'ss of exon 10
GCATGCAGACGGAGAGTACTGTGAGATTGTTACTGGACCAAACATGGGTGGAAAGAGTTGCTATATTCGCCAAGTGGCTCTCATTGCTATCATGGCCCAGgtagaacca--gcacttgacattatttgctcatgatccacattttatttgcttatgaccctgctgctt-gttttccttgtgctgttaaacccctgacatacgt
||||||||| |||||||||||| |||||||||||||||| || ||||| ||||| ||||| ||||||||||| |||||||| |||| ||| ||||| ||||||||| ||  ||| |      ||| |        |  |  | | |  |  ||  |   |||| |    |  |    | | || |  ||   |||| |     
GCATGCAGATGGAGAGTACTGTCAGATTGTTACTGGACCCAATATGGGGGGAAAAAGTTGTTATATTCGCCAGGTGGCTCTGATTGTTATAATGGCTCAGgtagaatcaatgcagtgtgtgctatatttctgccgttaatttatcaacttgttgaggttctgcagtaaagcatatgctttactttgtaaatactgaaagc---