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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGAGAGTGCAATTGCAGCCCTTAACTGTAGCGGCGCCATTTTAGGATCCCTGCCTATAAGgtttgatttcataaacctttttccttgatctaacttgatcttcccttttctctgttcttgttcctaacttgccacaatgtttttctctcatgtgtatacag

Basic information

species Vitis vinifera
transcript Vv16s0098g01040.t01
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110394549|gb|EC959681.1|EC959681
EST:     ATTGCAGCCCTTAACTGTAGCGGCGCCATTTTAGGATCCCTGCCTATAAG                         AGTCAGCCCATCAAAGACGCCTGTCAGGCCACGAGCTCCTCGCCCGGCCTT
genomic: ATTGCAGCCCTTAACTGTAGCGGCGCCATTTTAGGATCCCTGCCTATAAGgtttgatttc ... gtgtatacagAGTCAGCCCATCAAAGACGCCTGTCAGGCCACGAGCTCCTCGCCCGGCCTT
EST: gi|110693868|gb|EE070476.1|EE070476
EST:     ATTGCAGCCCTTAACTGTAGTGGCGCCATTTTAGGATCCCTGCCTATAAG                         AGTCAGCCCATCAAAGACGCCTGTCAGGCCACGAGCTCCTCGCCCAGCCTT
genomic: ATTGCAGCCCTTAACTGTAGCGGCGCCATTTTAGGATCCCTGCCTATAAGgtttgatttc ... gtgtatacagAGTCAGCCCATCAAAGACGCCTGTCAGGCCACGAGCTCCTCGCCCGGCCTT
EST: gi|254917332|gb|GR906158.1|GR906158
EST:     ATTGCAGCCCTTAACTGTAGCGGCGCCATTTTAGGATCCCTGCCTATAAG                         AGTCAGCCCATCAAAGACGCCTGTCAGGCCACGAGCTCCTCGCCCGGCCTT
genomic: ATTGCAGCCCTTAACTGTAGCGGCGCCATTTTAGGATCCCTGCCTATAAGgtttgatttc ... gtgtatacagAGTCAGCCCATCAAAGACGCCTGTCAGGCCACGAGCTCCTCGCCCGGCCTT
EST: gi|110406292|gb|EC971861.1|EC971861
EST:     ATTGCAGCCCTTAACTGTAGCGGCGCCATTTTAGGATCCCTGCCTATAAG                         AGTCAGCCCATCAAAGACGCCTGTCAGGCCACGAGCTCCTCGCCCGGCCTT
genomic: ATTGCAGCCCTTAACTGTAGCGGCGCCATTTTAGGATCCCTGCCTATAAGgtttgatttc ... gtgtatacagAGTCAGCCCATCAAAGACGCCTGTCAGGCCACGAGCTCCTCGCCCGGCCTT
EST: gi|110371491|gb|EC935557.1|EC935557
EST:     ATTGCAGCCCTTAACTGTAGCGGCGCCATTTTAGGATCCCTGCCTATAAG                         AGTCAGCCCATCAAAGACGCCTGTCAGGCCACGAGCTCCTCGCCCGGCCTT
genomic: ATTGCAGCCCTTAACTGTAGCGGCGCCATTTTAGGATCCCTGCCTATAAGgtttgatttc ... gtgtatacagAGTCAGCCCATCAAAGACGCCTGTCAGGCCACGAGCTCCTCGCCCGGCCTT
EST: gi|22015516|gb|BQ800550.1|BQ800550
EST:     GGCGCCATTTTAGGATCCCTGCCTATAAG                         AGTCAGCCCATCAAAGACGCCTGTCAGGCCACGAGCTCCTCGCCCAGCCTT
genomic: GGCGCCATTTTAGGATCCCTGCCTATAAGgtttgatttc ... gtgtatacagAGTCAGCCCATCAAAGACGCCTGTCAGGCCACGAGCTCCTCGCCCGGCCTT
EST: gi|45770361|gb|CN006213.1|CN006213
EST:     ATTGCAGCCCTTAACTGTAGCGGCGCCATTTTAGGATCCCTGCCTATAAG                         AGTCAGCCCATCAAAGACGCCTGTCAGGCCACGAGCTCCTCGCCCGGCCTT
genomic: ATTGCAGCCCTTAACTGTAGCGGCGCCATTTTAGGATCCCTGCCTATAAGgtttgatttc ... gtgtatacagAGTCAGCCCATCAAAGACGCCTGTCAGGCCACGAGCTCCTCGCCCGGCCTT
EST: gi|27586314|gb|CB009009.1|CB009009
EST:     ATTGCAGCCCTTAACTGTAGCGGCGCCATTTTAGGATCCCTGCCTATAAG                         AGTCAGCCCATCAAAGACACCTGTCAGGCCACGAGCTCCTCGCCCGGCCTT
genomic: ATTGCAGCCCTTAACTGTAGCGGCGCCATTTTAGGATCCCTGCCTATAAGgtttgatttc ... gtgtatacagAGTCAGCCCATCAAAGACGCCTGTCAGGCCACGAGCTCCTCGCCCGGCCTT
EST: gi|110385680|gb|EC950225.1|EC950225
EST:     ATTGCAGCCCTTAACTGTAGCGGCGCCATTTTAGGATCCCTGCCTATAAG                         AGTCAGCCCATCAAAGACGCCTGTCAGGCCACGAGCTCCTCGCCCGGCCTT
genomic: ATTGCAGCCCTTAACTGTAGCGGCGCCATTTTAGGATCCCTGCCTATAAGgtttgatttc ... gtgtatacagAGTCAGCCCATCAAAGACGCCTGTCAGGCCACGAGCTCCTCGCCCGGCCTT