Sequence
atgc intronic sequence ATGC exonic sequenceGCTAGTGAACGTCGGTGTGAGGAGTTGATCACTCAAGTTCCTGAATCTACTAGGCCTCTTTTGAGGCAGATTGAAGCTATGCAGgttgagctttgtttcctatttatttaaagacttgatgaaacttttgagtacactttgctcattggctcgttgatatgttgtgacatatgcacatatgcttggatctcacaatcaactgttatcttctactggtaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0098g00540.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA15G01980.1 (Glycine max), 5'ss of exon 11
GCTAGTGAACGTCGGTGTGAGGAGTTGATCACTCAAGTTCCTGAATCTACTAGGCCTCTTTTGAGGCAGATTGAAGCTATGCAGgttgagctttgtttcctatttatttaaagacttgatgaaacttttgagtacactttgctcattggctcgttgatatgttgtgacatatgcacatatgcttggatctcacaatcaactgttatcttctactggtaacag
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GCAAGTGAAAGACGGTGTGAGGAACTGATTACGCAAGTTCCAGAATCCACAAGGCCTCTTTTAAGGCAAATTGAAGCCATGCAGgttaa---------tacacatgattcagaatt-------actttt-----ccttctgttttttgttttgctg------catgagatctgtac-tagactagtattcaccttataacag--------------------
upper sequence: Vv16s0098g00540.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA13G43330.1 (Glycine max), 5'ss of exon 13
GCTAGTGAACGTCGGTGTGAGGAGTTGATCACTCAAGTTCCTGAATCTACTAGGCCTCTTTTGAGGCAGATTGAAGCTATGCAGgttgagctttgtttcctatttatttaaagacttgatgaaacttttgagtacactttgctcattggctcgttgatatgttgtgacatatgcacatatgcttggatctcacaatcaactgttatcttctactggtaacag
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GCAAGTGAAAGACGGTGTGAGGAACTGATTACGCAAGTTCCAGAATCCACAAGGCCACTTTTAAGGCAAATTGAAGCCATGCAGgttaa-------tacacatatgattcagagtt-------actcttccgtctgttttttgttttgccacatgg----gatctgtactagactagtatt----gaccttataacag------------------------
upper sequence: Vv16s0098g00540.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: AT1G79830.4 (Arabidopsis thaliana), 5'ss of exon 11
GCTAGTGAACGTCGGTGTGAGGAGTTGATCACTCAAGTTCCTGAATCTACTAGGCCTCTTTTGAGGCAGATTGAAGCTATGCAGgttgagctttgtttcctatttatttaaagacttgatgaaacttttgagtacactttgctcattggctcgttgatatgttgtgacatatgcacatatgcttggatctcacaatcaactgttatcttctactggtaacag
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GCTAGTGAGCGAAGGTGTGAGGAATTAATCACACAGGTTCCTGAGTCTACAAGGCCTCTCCTAAGACAGATTGAGGCTATGCAGgtaaaaaattgacccatatgttttt-----tctgaaagaacttctcctgagattagaatcttaaatt-------aaattgtaacat-tgcatgcctctt---atctgattggcgatag--------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161717204|gb|FC068490.1|FC068490EST: AAGTTCCTGAATCTACTAGGCCTCTTTTGAGGCAGATTGAAGCTATGCAG GAGACAACAGCCAGAAGAGCAGAAGCTTGGGCTGCTGTTGAGAGATCTCTG
genomic: AAGTTCCTGAATCTACTAGGCCTCTTTTGAGGCAGATTGAAGCTATGCAGgttgagcttt ... ctggtaacagGAGACAACAGCCAGAAGAGCAGAAGCTTGGGCTGCTGTTGAGAGATCTCTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTAGTGAACGTCGGTGTGAGGAGTTGATCACTCAAGTTCCTGAATCTACTAGGCCTCTTTTGAGGCAGATTGAAGCTATGCAGgttgagctttgtttcctatttatttaaagacttgatgaaacttttgagtacactttgctcattggctcgttgatatgttgtgacatatgcacatatgcttggatctcacaatcaactgttatcttctactggtaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC