1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGTCTAGGCTCCATTGgtaagatttcaagctcttagtacacagggtgtccctttttttccattgtagccattaataagggtctgtttgtttcag
species | Vitis vinifera |
transcript | Vv16s0050g02480.t01 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AGAGGGTCTAAGCTCCATTG TTGCGGAAGGTGGATCAAACTGGAGCATGGGGCAAAGGCAGCTCTTCTGTTEST: gi|110699494|gb|EE076542.1|EE076542
genomic: AGAGGGTCTAGGCTCCATTGgtaagatttc ... tttgtttcagTTGCGGAAGGTGGATCAAACTGGAGCATGGGGCAGAGGCAGCTCTTCTGTT
EST: TCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGTCTAGGCTCCATTG TTGCGGAAGGTGGATCAAACTGGAGCATGGGGCAGAGGCAGCTCTTCTGTTEST: gi|110713613|gb|EE089685.1|EE089685
genomic: TCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGTCTAGGCTCCATTGgtaagatttc ... tttgtttcagTTGCGGAAGGTGGATCAAACTGGAGCATGGGGCAGAGGCAGCTCTTCTGTT
EST: TCAGCTTCAGGAAGCTGTCCAGGAAAAAGAAGAGGGTCTAGGCTCCATTG TTGCGGAAGGTGGATCAAACTGGAGCATGGGGCAGAGGCAGCTCTTCTGTTEST: gi|30299486|gb|CB976280.1|CB976280
genomic: TCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGTCTAGGCTCCATTGgtaagatttc ... tttgtttcagTTGCGGAAGGTGGATCAAACTGGAGCATGGGGCAGAGGCAGCTCTTCTGTT
EST: TCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGTCTAGGCTCCATTG TTGCGGAAGGTGGATCAAACTGGAGCATGGGGCAGAGGCGGCTCTTCTGTTEST: gi|34362924|gb|CF404509.1|CF404509
genomic: TCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGTCTAGGCTCCATTGgtaagatttc ... tttgtttcagTTGCGGAAGGTGGATCAAACTGGAGCATGGGGCAGAGGCAGCTCTTCTGTT
EST: TCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGTCTAGGCTCCATTG TTGCGGAAGGTGGATCAAACTGGAGCATGGGGCAGAGGCAGCTCTTCTGTTEST: gi|30300431|gb|CB977225.1|CB977225
genomic: TCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGTCTAGGCTCCATTGgtaagatttc ... tttgtttcagTTGCGGAAGGTGGATCAAACTGGAGCATGGGGCAGAGGCAGCTCTTCTGTT
EST: TCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGTTTAGGCTCCATTG TTGCGGAAGGTGGATCAAACTGGAGCATGGGGCAGAGGCAGCTTTTCTGTTEST: gi|110695979|gb|EE074612.1|EE074612
genomic: TCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGTCTAGGCTCCATTGgtaagatttc ... tttgtttcagTTGCGGAAGGTGGATCAAACTGGAGCATGGGGCAGAGGCAGCTCTTCTGTT
EST: TCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGTCTAGGCTCCATTG TTGCGGAAGGTGGATCAAACTGGAGCATGGGGCAGAGGCAGCTCTTCTGTTEST: gi|32249769|gb|CD715588.1|CD715588
genomic: TCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGTCTAGGCTCCATTGgtaagatttc ... tttgtttcagTTGCGGAAGGTGGATCAAACTGGAGCATGGGGCAGAGGCAGCTCTTCTGTT
EST: TCAGCTTCGGGAGGCTGTCCAGGAAAAGGAAGAGGGTCTAAGCTCCATTG TTGCGGAAGGTGGATCANACTGGAGCATGGGGCAGAGGCAGCTCTTCTGTTEST: gi|34542733|gb|CF510965.1|CF510965
genomic: TCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGTCTAGGCTCCATTGgtaagatttc ... tttgtttcagTTGCGGAAGGTGGATCAAACTGGAGCATGGGGCAGAGGCAGCTCTTCTGTT
EST: TCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGTCTAGGCTCCATTG TTGCGGAAGGTGGATCAAACTGGAGCATGGGGCAGAGGCAGCTCTTCTGTTEST: gi|34549752|gb|CF517984.1|CF517984
genomic: TCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGTCTAGGCTCCATTGgtaagatttc ... tttgtttcagTTGCGGAAGGTGGATCAAACTGGAGCATGGGGCAGAGGCAGCTCTTCTGTT
EST: TCAGCTTCGGGAGGCTGTCCAGGAAAAGTTAGAGGGTCTAAGCTCCATTG TTGCGGAAGGTGGATCAAACTGGAGCATGGGGCAGAGGCAGCTCTTCTGTTEST: gi|34542820|gb|CF511052.1|CF511052
genomic: TCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGTCTAGGCTCCATTGgtaagatttc ... tttgtttcagTTGCGGAAGGTGGATCAAACTGGAGCATGGGGCAGAGGCAGCTCTTCTGTT
EST: TCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGTCTAGGCTCCATTG TTGCGGAAGGTGGATCAAACTGGAGCATGGGGCAGAGGCAGCTCTTCTGTT
genomic: TCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGTCTAGGCTCCATTGgtaagatttc ... tttgtttcagTTGCGGAAGGTGGATCAAACTGGAGCATGGGGCAGAGGCAGCTCTTCTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGTCTAGGCTCCATTGgtaagatttcaagctcttagtacacagggtgtccctttttttccattgtagccattaataagggtctgtttgtttcag
- - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - AAGAGG