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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTCAGTACTTCAATAGTTGTTTTCACTAGAACTGGTTTCATGGCTATCCTTCTGAGCCATTATCGACCTTCTGGCACCATATTTGCCTTTACAAATGAgtaagtctattattctcgactgatataatctgcatagttttaccatcaagtgtgcatgtaggaggctgtactgcctgtccaaatacgttacatactcttt...

Basic information

species Vitis vinifera
transcript Vv16s0050g02180.t01
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: LOC_Os01g47080.1 (Oryza sativa), 5'ss of exon 10
CTCTCAGTACTTCAATAGTTGTTTTCACTAGAACTGGTTTCATGGCTATCCTTCTGAGCCATTATCGACCTTCTGGCACCATATTTGCCTTTACAAATGAgtaag--tctattattctcga-ctgatataatctgcatagttttaccatcaagtgtgcatgtaggaggctgtactgcctgtccaa-atacgttacatactcttt
||||  | || ||||| || |||||||| || || || || ||||||||||| || || ||||| || |||||||||||||| |||||||||||  |  ||||||  |||||| || |||  |||||     ||  |||         |    | |   ||||  |   || | |  | ||  || | || |||  |   ||||
CTCTTGGAACATCAATTGTGGTTTTCACCAGGACAGGATTTATGGCTATCCTACTTAGTCATTACCGCCCTTCTGGCACCATTTTTGCCTTTACGGACCAgtaagattctatttttttcgttctgatg----cttgataaaccccaatttctttctagttgtataatcttgaattaacagtaaaatacacattatgttaacttt

upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GRMZM2G152686_T01 (Zea mays), 5'ss of exon 10
CTCTCAGTACTTCAATAGTTGTTTTCACTAGAACTGGTTTCATGGCTATCCTTCTGAGCCATTATCGACCTTCTGGCACCATATTTGCCTTTACAAATGAgtaagtctattattctcgactgatataatctgcatagttttaccatcaagtgtgcatgtaggaggctgtactgcctg-tccaaatacgtta-catactcttt--
| ||  | || |||||||| ||||||||||| || || || |||||||| || || || || || || || |||||||| || |||||||||||| |||||||||| |  | |||    |||   || | ||    | |  |  |  || | |  |     |   || || | | || |||  || | | |  | | | | |  
CCCTTCGAACATCAATAGTGGTTTTCACTAGGACGGGATTTATGGCTATACTGCTTAGTCACTACCGTCCATCTGGCACTATTTTTGCCTTTACAGATGAgtaagttttctgttcctt-ctgtgctagtgtgt---gctacaagacaaattttatacaatcgcttctatattccatgatcctgattcatcaataaaatgtctcc

upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA09G23150.1 (Glycine max), 5'ss of exon 10
CTCTCAGTACTTCAATAGTTGTTTTCACTAGAACTGGTTTCATGGCTATCCTTCTGAGCCATTATCGACCTTCTGGCACCATATTTGCCTTTACAAATGAgtaagtc--tattattctcgactgat--ataatctg-catagttttaccatcaagtgtgcatgtaggaggctgtactgcctgtccaaatacgttacatactcttt
||||  | || ||||  ||||| ||||||||||| |||||||||||| ||||||||||||||||||| ||||| |||||||||||||| |||||| |||||| |||   | || | | |  || ||  ||||  || | ||  | |    | ||     | |||| |    | |  ||  | |        |||  | | |    
CTCTTGGAACCTCAACTGTTGTCTTCACTAGAACGGGTTTCATGGCTGTCCTTCTGAGCCATTATCGTCCTTCGGGCACCATATTTGCTTTTACAGATGAgtgagttctttttgtccccttcttatcgataaaatgacttatatatttttttaaagaaacttgtatgga--tattttgatttttttcccttgtttgacattt---

upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA20G30430.1 (Glycine max), 5'ss of exon 10
CTCTCAGTACTTCAATAGTTGTTTTCACTAGAACTGGTTTCATGGCTATCCTTCTGAGCCATTATCGACCTTCTGGCACCATATTTGCCTTTACAAATGAgtaagtctattattctcgactgatataatctgcatagttttaccatcaagtgtgcatgtaggaggctgtactgcctgtccaaatacgttacatactcttt
| ||  | || ||||  ||||| ||||||||| | || ||||||||||||||| ||||||| ||||||||||| |||||||||||||| |||||| || |||||||   || || ||   |  | |      ||||   |     | ||    | |      ||    || |   |   ||   || | || || |    
CCCTTGGAACCTCAACTGTTGTCTTCACTAGATCAGGCTTCATGGCTATCCTTTTGAGCCACTATCGACCTTCAGGCACCATATTTGCTTTTACAGATCAgtaagttactttttttccctttctcttgataccataagatattttttaaaaaagaaaactacagaagataatagttaaacatgaacctaacttagtagca

upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA10G37210.1 (Glycine max), 5'ss of exon 10
CTCTCAGTACTTCAATAGTTGTTTTCACTAGAACTGGTTTCATGGCTATCCTTCTGAGCCATTATCGACCTTCTGGCACCATATTTGCCTTTACAAATGAgtaagtc--------tattattctcgactgatataatctgcatagttttaccatcaagtgtgcatgtaggaggctgtactgcctgtccaaatacgttacatactcttt
| ||| | || ||||  ||||| ||||||||| | || ||||||||||||||| ||||||| ||||||||||| |||||||||||||| |||||| || |||||||         | |  || ||   |||||  ||  | | | ||||   ||  |       |  || ||    ||||   |   || |  | | |  ||      
CCCTCGGAACCTCAACTGTTGTCTTCACTAGATCAGGCTTCATGGCTATCCTTTTGAGCCACTATCGACCTTCAGGCACCATATTTGCTTTTACAGATCAgtaagttccgtcctttttccttttctcttgataccataagaaaactttttttatttaaaaaaattacagaaga---tactaggtaaacataagcctgatttaa-----

upper sequence: Vv16s0050g02180.t01 (Vitis vinifera), 5'ss of exon 10
lower sequence: GLYMA16G28980.1 (Glycine max), 5'ss of exon 10
CTCTCAGTACTTCAATAGTTGTTTTCACTAGAACTGGTTTCATGGCTATCCTTCTGAGCCATTATCGACCTTCTGGCACCATATTTGCCTTTACAAATGAgtaagtc--tattattctcgactgat--ataatctgcatagttttaccatcaagtgtgcatgtaggaggctgtactgcctgtccaaatacgttacatactcttt
| ||  | || ||||  ||||| ||||||||||| |||||||||||| |||||||||| || ||||| |||||||| ||||||||||| |||||| |||||| |||   | || | | |  || ||  ||||   |   | || ||   |         |  ||   || | |  ||  | | |   |  |||  | | |    
CCCTTGGAACCTCAACTGTTGTCTTCACTAGAACGGGTTTCATGGCTGTCCTTCTGAGTCACTATCGTCCTTCTGGGACCATATTTGCTTTTACAGATGAgtgagttctttttgtccccttcttattgataaaaag-gcacttatatttttttaaagaaacttatatggatattttgatttttcccct-tgtttgacatttg--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110361781|gb|EC925279.1|EC925279
EST:     CTTCTGAGCCATTATCGACCTTCTGGCACCATATTTGCCTTTACAAATGA                         GGAGAGAGTACAACAGAGACTAGCCGTGTACCAAGGGGTATGTCCCATATA
genomic: CTTCTGAGCCATTATCGACCTTCTGGCACCATATTTGCCTTTACAAATGAgtaagtctat ... ggccatgcagGGAGAGAGTACAACAGAGACTAGCCGTGTACCAAGGGGTATGTCCCATATA
EST: gi|30134905|gb|CB920243.1|CB920243
EST:     CTTCTGAGCCATTATCGACCTTCTGGCACCATATTTGCCTTTACAAATGA                         GGAGAGAGTACAACAGAGACTAGCCGTGTACCAAGGGGTATGTCCCATATA
genomic: CTTCTGAGCCATTATCGACCTTCTGGCACCATATTTGCCTTTACAAATGAgtaagtctat ... ggccatgcagGGAGAGAGTACAACAGAGACTAGCCGTGTACCAAGGGGTATGTCCCATATA
EST: gi|30321651|gb|CD004913.1|CD004913
EST:     CTTCTGAGCCATTATCGACCTTCTGGCACCATATTTGCCTTTACAAATGA                         GGAGAGAGTACAACAGAGACTAGCCGTGTACCAANGGGTATGTCCCATATA
genomic: CTTCTGAGCCATTATCGACCTTCTGGCACCATATTTGCCTTTACAAATGAgtaagtctat ... ggccatgcagGGAGAGAGTACAACAGAGACTAGCCGTGTACCAAGGGGTATGTCCCATATA